View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21194_low_27 (Length: 227)
Name: NF21194_low_27
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 32127463 - 32127250
Alignment:
| Q |
1 |
ctcaacaatcattcagacccaaagcacttgttctccc-agtcataaaagatagcgcaacaacactccaatacatagctcaaattaaccaaagaaccccac |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32127463 |
ctcaacaatcattcagacccaaagcacttgttctccccagtcacaaaagatagcgcaacaacactccaatacatagctcaaattaaccaaagaaccccac |
32127364 |
T |
|
| Q |
100 |
tagtcccactaaaccttgtcgttgatcttggcggcaaatttctctgagccgactgtgaaaaccactacacttcctccacataccgccctgcacggtgccc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32127363 |
tagtcccactaaaccttgtcgttgatcttggcggcaaatttctctgggtcgactgtgaaaaccactacacttcctccacataccgccctgtacggtgccc |
32127264 |
T |
|
| Q |
200 |
ctccgccctatgct |
213 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
32127263 |
ctccgcccaatgct |
32127250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 32139248 - 32139051
Alignment:
| Q |
1 |
ctcaacaatcattcagacccaaagcacttgttctcccagtcataaaagatagcgcaacaacactccaatacatagctcaaattaaccaaagaaccccact |
100 |
Q |
| |
|
|||||||||| ||||| || ||||| |||||||||||| ||| ||||||| | || |||||| |||||||| ||||||||| ||||| ||||||||| | |
|
|
| T |
32139248 |
ctcaacaatctttcaggccaaaagcccttgttctcccaatcacaaaagatggggccacaacaaaccaatacaaagctcaaatcaaccagagaaccccatt |
32139149 |
T |
|
| Q |
101 |
agtcccactaaaccttgtcgttgatcttggcggcaaatttctctgagccgactgtgaaaaccactacacttcctccacataccgccctgcacggtgcc |
198 |
Q |
| |
|
||||||||| ||| | |||| ||||| || ||| | ||||| || | ||||| |||||| | |||| ||| |||||||||||||||||||| |||| |
|
|
| T |
32139148 |
agtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgactgcgaaaacaaatacatttcttccacataccgccctgcacgctgcc |
32139051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 32148635 - 32148426
Alignment:
| Q |
4 |
aacaatcattcagacccaaagcacttgttctcccagtcataaaagatagcgcaacaacactccaatacatagctcaaattaaccaaagaaccccactagt |
103 |
Q |
| |
|
||||||| ||||| || ||||| || ||||||||||||| ||||||| ||| || ||| |||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
32148635 |
aacaatctttcaggccaaaagccctagttctcccagtcacaaaagatgtcgctaccacaaaccaatacaaagctcaaatcaaccaaagaacaccactagt |
32148536 |
T |
|
| Q |
104 |
cccactaaaccttgtcgttgatcttggcggcaaatttctctgagccgactgtgaaaaccactacacttcctccacataccgccctgcacggtgcccctcc |
203 |
Q |
| |
|
|||||| ||| | |||| ||||| || ||| |||||||| | || || |||||||| |||| ||||||||||||||| ||||||||||| | ||| |
|
|
| T |
32148535 |
cccactgaacatcatcgtcgatctcggtggcctgtttctctgggttgattgcgaaaaccagtacatttcctccacataccgtcctgcacggtgtcgctct |
32148436 |
T |
|
| Q |
204 |
gccctatgct |
213 |
Q |
| |
|
|||| ||||| |
|
|
| T |
32148435 |
gcccaatgct |
32148426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University