View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21194_low_3 (Length: 492)
Name: NF21194_low_3
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_low_3 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 4 - 476
Target Start/End: Complemental strand, 50362353 - 50361868
Alignment:
| Q |
4 |
cagagaagcaggatatccatactgtagtttgtaatgcttagtaagggtagcagaattgtatttatttatagagcaattctaaaatacttcatgcatatat |
103 |
Q |
| |
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|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50362353 |
cagaaaagcaggatatcaaaactgtagtttgtaatgcttagtaagggtagcagaattgtatttatttatagag-aattctaaaatacttcatgcatatat |
50362255 |
T |
|
| Q |
104 |
tgcaagcatttgtgcaaagaatagatg--------------aaagacaattttaaaaagacggctcaaaattaaatacaccagnnnnnnnnnnnnncagc |
189 |
Q |
| |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50362254 |
tgcaagcatttgtgaaaagaatagatggaaaagaatagatgaaagacaattttaaaaagacggctcaaaattaaatacaccagaaaaaacaaaaaacagc |
50362155 |
T |
|
| Q |
190 |
actacaattattgttgtttgtgagttgaacatggtaatgtatactactcaaagttggttttaataactcttcgaattacatcaattattgtttttaggga |
289 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50362154 |
actacaattattgttgtttgtgagttgaacatggtaatgtatactactcaaagttggttttaataactcttcgaattacatcaattattgtttttaggga |
50362055 |
T |
|
| Q |
290 |
aatgctannnnnnnctaaacaatgtacaattatgatttagttataaattgaattacattgagcacacaaactctcaatatattaagccgagcatcagcaa |
389 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
50362054 |
aatgctatttttttctaaacaatgtacaattatgatttagttataaattgaattacattgagcacacaaactctcaatatattaagctgagcatctgcaa |
50361955 |
T |
|
| Q |
390 |
catttcagttcctgctgtcagaaaacgatagatgcagtggaaataattcacaatttgtagaaactcatctatatagattcatgtatg |
476 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50361954 |
catttcagttcctgctgtcagaaaacgatagatgcagtggaaataattcacaatttgtagaaactcatctatatagattcatgtatg |
50361868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 346
Target Start/End: Original strand, 12604542 - 12604577
Alignment:
| Q |
311 |
atgtacaattatgatttagttataaattgaattaca |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12604542 |
atgtacaattatgatttagttataaattgaattaca |
12604577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 476
Target Start/End: Original strand, 12604720 - 12604763
Alignment:
| Q |
433 |
taattcacaatttgtagaaactcatctatatagattcatgtatg |
476 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
12604720 |
taattcacaatgtgtagaaactcatctatatagattcgtgtatg |
12604763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 64 - 167
Target Start/End: Complemental strand, 433848 - 433744
Alignment:
| Q |
64 |
tttatttatagagcaattctaaaatacttcatgcatatattgcaagcatttgtgcaaagaatagatgaaagac-aattttaaaaagacggctcaaaatta |
162 |
Q |
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|
||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||| | || ||||| || ||| |||||||| ||||||||| |
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| T |
433848 |
tttatttatagagcaattctagaaaattttatgcatatattgcaagcatttgtgcaaagaacatatagaagacaaaattttaaaagacgtgtcaaaatta |
433749 |
T |
|
| Q |
163 |
aatac |
167 |
Q |
| |
|
||||| |
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|
| T |
433748 |
aatac |
433744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 434114 - 434070
Alignment:
| Q |
4 |
cagagaagcaggatatccatactgtagtttgtaatgcttagtaag |
48 |
Q |
| |
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|||| |||||||||||| | ||| ||||||||||||||||||||| |
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|
| T |
434114 |
cagaaaagcaggatatcaaaactatagtttgtaatgcttagtaag |
434070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 10452548 - 10452506
Alignment:
| Q |
311 |
atgtacaattatgatttagttataaattgaattacattgagca |
353 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10452548 |
atgtacaattatgatttagttataaattgaattacatagagca |
10452506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 476
Target Start/End: Complemental strand, 10452189 - 10452146
Alignment:
| Q |
433 |
taattcacaatttgtagaaactcatctatatagattcatgtatg |
476 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
10452189 |
taattcacaatgtgtagaaactcatctatatagattcgtgtatg |
10452146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 346
Target Start/End: Complemental strand, 10452361 - 10452331
Alignment:
| Q |
316 |
caattatgatttagttataaattgaattaca |
346 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
10452361 |
caattatgatttagttataaattgaattaca |
10452331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 346
Target Start/End: Complemental strand, 12390 - 12355
Alignment:
| Q |
311 |
atgtacaattatgatttagttataaattgaattaca |
346 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
12390 |
atgtacaattatgatttagttataaattgaattaca |
12355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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