View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21194_low_5 (Length: 451)
Name: NF21194_low_5
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 206 - 437
Target Start/End: Complemental strand, 22016927 - 22016697
Alignment:
| Q |
206 |
cttgtgaactgtattccaaactcaaagtcattgttattgcatttacttcaagataagtgtgtcataaacacataacttggcctttaaatacaagtaccaa |
305 |
Q |
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| T |
22016927 |
cttgtgaactgtattccaaactcaaagtcattgttattgcatttacttcaagataagtgtgtcataaacacataacttggcctttaaatacaagtaccaa |
22016828 |
T |
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| Q |
306 |
gaacaaagaaggaatcatttcttcattgtatcggtttagtttgttcctaaaccttaaaaagataatgagagggacacaaattgtttttgttttactttgg |
405 |
Q |
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| T |
22016827 |
gaacaaagaaggaatca-ttcttcattgtattggtttagtttgttcctaaaccttaaaaagataatgagagggacacaaattgtttttgttttgctttgg |
22016729 |
T |
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| Q |
406 |
tttcttggtgtttatgttcctgcttctttttg |
437 |
Q |
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| T |
22016728 |
tttcttggtgtttatgttcctgcttctttttg |
22016697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 22017127 - 22017019
Alignment:
| Q |
1 |
cacaaagcggttaagcaacaacctccaacacttacacgcatgtgataatnnnnnnngacaccacaaacttatgatattaaatccaactacttaggcattc |
100 |
Q |
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| T |
22017127 |
cacaaagcggttaagcaacaacctccaacacttacacgcatgtgataataaaaaaagacaccacagacttatgagattaaatccaactacttaggcattc |
22017028 |
T |
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| Q |
101 |
tcatagaag |
109 |
Q |
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| T |
22017027 |
tcatagaag |
22017019 |
T |
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