View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21194_low_6 (Length: 416)
Name: NF21194_low_6
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 41784045 - 41783673
Alignment:
| Q |
1 |
cattaaatcttttctttggttagaaaccactttcccaatgagattatcatattgtgcattgagtgactggtactgcttgtataagtcctccgttaatccc |
100 |
Q |
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| T |
41784045 |
cattaaatcttttctttggttagaaaccactttcccaatgagattatcatattgtgcattaagtgactggtactgcttgtataagtcctccgttaatccc |
41783946 |
T |
|
| Q |
101 |
ataagttctgtatcttttctagaacgtctagggctcgcatcttttttgctttggttttcgttcttaataagcttctggatttttgtgatcttggtttcaa |
200 |
Q |
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| T |
41783945 |
ataagttctgtatcttttctagaacgtctaggactcgcatcttttttgctttggttttcgttcttaataagcttctggatttttgtgatcttggtttcaa |
41783846 |
T |
|
| Q |
201 |
tatctgcataaaatgggaaattttgatacatttacattaataaaatcccaaacatttcaaaattcagttagaaaaagctgtcaattgcaaagactacaaa |
300 |
Q |
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| T |
41783845 |
tgcctgcataaaatgggaaattatgatacatttacattaataaaatcccaaacatttcaaaattcagttagaaaaagctgtcaattgcaaagactacaaa |
41783746 |
T |
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| Q |
301 |
tataagtgttaagatttcttagttgcaacaatattagcaagaacatcaccgatggtgtagtccaccttggggt |
373 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
41783745 |
tataagtgttacgatttcttagttgcaacaatattagcaagaacatcactgatggtgtagtccgccttggggt |
41783673 |
T |
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