View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21195_low_1 (Length: 476)

Name: NF21195_low_1
Description: NF21195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21195_low_1
NF21195_low_1
[»] chr3 (6 HSPs)
chr3 (178-377)||(29006103-29006304)
chr3 (18-150)||(29005971-29006103)
chr3 (425-464)||(13241867-13241906)
chr3 (425-464)||(29007145-29007184)
chr3 (425-464)||(54835277-54835316)
chr3 (424-458)||(41072908-41072942)
[»] chr7 (2 HSPs)
chr7 (425-464)||(6951027-6951066)
chr7 (425-464)||(12333669-12333708)
[»] chr4 (1 HSPs)
chr4 (425-464)||(18187023-18187062)
[»] chr5 (1 HSPs)
chr5 (425-464)||(39507194-39507233)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 178 - 377
Target Start/End: Original strand, 29006103 - 29006304
Alignment:
Q  178 acatccacttattcacttataaaagataaatttctaacaactaaattacttnnnnnnnc--cgagagatcactacacacgacatatgatggcccctacct 275  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| || ||          |||||||||||||||||||||||| ||||| ||||||||    
T  29006103 acatccacttaatcacttataaaagataaatttctaacaactaaactatttgaaaaaaaaacgagagatcactacacacgacataagatgggccctacct 29006202  T
Q  276 tcctcatctctgcagaaatcatgcgcacattctcaatagagattggaatttggggccccctccccattcctggtagttaattgcctaaattgggttcctc 375  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  29006203 tcctcatctctgcagaaatcatgcgcccattctcaatatagattggaatttgggcccccctccccattcctggtagttaattgcctaaattggtttcctc 29006302  T
Q  376 at 377  Q
    ||    
T  29006303 at 29006304  T

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Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 29005971 - 29006103
Alignment:
Q  18 aatatatatgcaagcaataatatttttgatttgatatcaacataatttatgccaaaagtctctctctatattcctttaaaacgagggatcatcgttttgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29005971 aatatatatgcaagcaataatatttttgatttgatatcaacataatttatgccaaaagtctctctctatattcctttaaaacgagggatcattgttttgg 29006070  T
Q  118 gcttgacttagatgatagaaacattatataata 150  Q
    |||||||| || |||||||||||||||||||||    
T  29006071 gcttgactcagttgatagaaacattatataata 29006103  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 13241906 - 13241867
Alignment:
Q  425 gtattcaccttatcaatatctcaaatccattatggatttt 464  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13241906 gtattcaccttatcaatatctcaaatccattatggatttt 13241867  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 29007145 - 29007184
Alignment:
Q  425 gtattcaccttatcaatatctcaaatccattatggatttt 464  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29007145 gtattcaccttatcaatatctcaaatccattatggatttt 29007184  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 54835316 - 54835277
Alignment:
Q  425 gtattcaccttatcaatatctcaaatccattatggatttt 464  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  54835316 gtattcaccttatcaatatctcaaatccattatggatttt 54835277  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 41072908 - 41072942
Alignment:
Q  424 ggtattcaccttatcaatatctcaaatccattatg 458  Q
    ||||||||||||||||||||| |||||||||||||    
T  41072908 ggtattcaccttatcaatatcccaaatccattatg 41072942  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 6951066 - 6951027
Alignment:
Q  425 gtattcaccttatcaatatctcaaatccattatggatttt 464  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6951066 gtattcaccttatcaatatctcaaatccattatggatttt 6951027  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 12333669 - 12333708
Alignment:
Q  425 gtattcaccttatcaatatctcaaatccattatggatttt 464  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12333669 gtattcaccttatcaatatctcaaatccattatggatttt 12333708  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Original strand, 18187023 - 18187062
Alignment:
Q  425 gtattcaccttatcaatatctcaaatccattatggatttt 464  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18187023 gtattcaccttatcaatatctcaaatccattatggatttt 18187062  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 39507233 - 39507194
Alignment:
Q  425 gtattcaccttatcaatatctcaaatccattatggatttt 464  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  39507233 gtattcaccttatcaatatctcaaatccattatgaatttt 39507194  T

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