View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21195_low_6 (Length: 238)

Name: NF21195_low_6
Description: NF21195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21195_low_6
NF21195_low_6
[»] chr8 (3 HSPs)
chr8 (18-226)||(11023645-11023853)
chr8 (67-225)||(43736969-43737127)
chr8 (64-192)||(8476118-8476246)
[»] chr5 (1 HSPs)
chr5 (67-225)||(21469-21627)
[»] chr4 (5 HSPs)
chr4 (67-225)||(37495354-37495512)
chr4 (67-225)||(22502578-22502736)
chr4 (67-226)||(50962712-50962871)
chr4 (64-174)||(37076958-37077068)
chr4 (67-135)||(46593775-46593843)
[»] chr2 (4 HSPs)
chr2 (67-225)||(38506285-38506443)
chr2 (64-200)||(32663239-32663375)
chr2 (67-225)||(34768223-34768385)
chr2 (101-179)||(45637780-45637855)
[»] chr7 (6 HSPs)
chr7 (64-200)||(42357248-42357384)
chr7 (67-225)||(22120374-22120532)
chr7 (67-225)||(40542467-40542625)
chr7 (64-200)||(45182407-45182543)
chr7 (67-225)||(7929247-7929405)
chr7 (67-223)||(44263277-44263433)
[»] chr3 (3 HSPs)
chr3 (64-200)||(36500752-36500888)
chr3 (67-225)||(15424683-15424841)
chr3 (67-223)||(12932558-12932714)
[»] scaffold0744 (1 HSPs)
scaffold0744 (67-225)||(6598-6756)
[»] scaffold0071 (1 HSPs)
scaffold0071 (67-225)||(37397-37555)
[»] scaffold0411 (1 HSPs)
scaffold0411 (64-200)||(10037-10173)
[»] chr1 (1 HSPs)
chr1 (156-200)||(18416449-18416493)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 11023853 - 11023645
Alignment:
Q  18 gttacccgatcgagtacagaagtcaagtgtcgagctatggttcgttttgaaacatttactacaagaactatatttttgtgaggttggtcaaatggaactt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11023853 gttacccgatcgagtacagaagtcaagtgtcgagctatggttcgttttgaaacatttactacaagaactatatttttgtgaggttggtcaaatggaactt 11023754  T
Q  118 gtatgtgataaccaatcagctttacacctctcctccagtccagttattcacgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaaga 217  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  11023753 gtacgtgataaccaatcagctttacacctctcctccagtccagttattcacgagaggacaaagcatgtagaagtttattgtcatttcattagggaaaaga 11023654  T
Q  218 tcctctcta 226  Q
    |||||||||    
T  11023653 tcctctcta 11023645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 43736969 - 43737127
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||| |||||| ||  |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  43736969 aaacatttactgcaagaattaagtttttgtgaggttggtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 43737068  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
    ||||||| ||||| ||| |||||||||| ||||||||||||||||||||||| ||||||    
T  43737069 acgagagaacaaagcatatagaagttgactgtcatttcattagggaaaagattctctct 43737127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 8476246 - 8476118
Alignment:
Q  64 ttgaaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagtta 163  Q
    ||||| |||||||| || ||| || ||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||| |||| ||||||||    
T  8476246 ttgaatcatttactgcatgaattacatttttgtgagcttggtcaaatggaacttgtatgtgatagtcaatcagctttacacctctcttccaatccagtta 8476147  T
Q  164 ttcacgagaggacaaaccatgtagaagtt 192  Q
    |||||||||||||||| ||||| ||||||    
T  8476146 ttcacgagaggacaaagcatgttgaagtt 8476118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 21469 - 21627
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||  |||||| ||  |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  21469 aaacatttaccgcaagaattaagtttttgtgaggttggtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 21568  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
    ||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||    
T  21569 acgagagaacaaagcatatagaagttgattgtcatttcattagggaaaagattctctct 21627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 37495354 - 37495512
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||| |||||| ||  |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  37495354 aaacatttactgcaagaattaagtttttgtgaggttggtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 37495453  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
    ||||||| ||||| ||| |||||||||| ||||||||||||||||||||||| ||||||    
T  37495454 acgagagaacaaagcatatagaagttgactgtcatttcattagggaaaagattctctct 37495512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 22502736 - 22502578
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||  |||||| ||  |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  22502736 aaacatttaccgcaagaattaagtttttgtgaggttggtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 22502637  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
    ||||||| ||||| ||| |||||||||| ||||||||||||||||||||||| ||||||    
T  22502636 acgagagaacaaagcatatagaagttgactgtcatttcattagggaaaagattctctct 22502578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 50962712 - 50962871
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||| |||||| ||  ||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  50962712 aaacatttactgcaagaattaagtttttgtaaggttggtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 50962811  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctcta 226  Q
    | |||||  |||| ||| ||||||| || ||||||||||||||||||||||| |||||||    
T  50962812 atgagagatcaaagcatatagaagtcgactgtcatttcattagggaaaagattctctcta 50962871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 37076958 - 37077068
Alignment:
Q  64 ttgaaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagtta 163  Q
    |||||||||||||| || ||| || | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||     
T  37076958 ttgaaacatttactgcaggaattacaattttgtgaggttggtcaaatggaacttgtatgtgataatcaatcagctttacacctctcctccaatccagttt 37077057  T
Q  164 ttcacgagagg 174  Q
    |||||||||||    
T  37077058 ttcacgagagg 37077068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 46593843 - 46593775
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatca 135  Q
    ||||||||||| |||||| ||  |||||||||||||||||| |||||||| ||||||||||| ||||||    
T  46593843 aaacatttactgcaagaattaagtttttgtgaggttggtcagatggaactcgtatgtgataatcaatca 46593775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 38506285 - 38506443
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||| |||||| ||  |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  38506285 aaacatttactgcaagaattaagtttttgtgaggttggtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 38506384  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
    ||||||| ||||| ||| |||||||||| ||||||||||||||||||||||| ||||||    
T  38506385 acgagagaacaaagcatatagaagttgactgtcatttcattagggaaaagattctctct 38506443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 32663375 - 32663239
Alignment:
Q  64 ttgaaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagtta 163  Q
    |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||     
T  32663375 ttgaaacatttactgcaagaattacatttttgtgaggttggtcaaatggaacttgtatgtgataatcaatcaactttacacctctcctccaatccagttt 32663276  T
Q  164 ttcacgagaggacaaaccatgtagaagttgattgtca 200  Q
    |||||||||||||||| ||| | |||| ||| |||||    
T  32663275 ttcacgagaggacaaagcatattgaaggtgactgtca 32663239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 34768385 - 34768223
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatgga----acttgtatgtgataaccaatcagctttacacctctcctccagtccagtt 162  Q
    ||||||||||| |||||| ||  ||||||||||||||||||||||||    ||| ||||||||||| ||||||||||||||||||||||||| ||| |||    
T  34768385 aaacatttactgcaagaattaagtttttgtgaggttggtcaaatggatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtt 34768286  T
Q  163 attcacgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
     |||||||||| ||||| ||  |||||||||| ||||||||||||||||||||||| ||||||    
T  34768285 tttcacgagagaacaaagcaaatagaagttgactgtcatttcattagggaaaagattctctct 34768223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 45637780 - 45637855
Alignment:
Q  101 ttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattcacgagaggacaaa 179  Q
    ||||||||||||||||||||||||||||||||| ||||||    | || ||||| |||| || ||||||||||||||||    
T  45637780 ttggtcaaatggaacttgtatgtgataaccaataagcttt---gcgcttctccaatccactttttcacgagaggacaaa 45637855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 42357384 - 42357248
Alignment:
Q  64 ttgaaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagtta 163  Q
    |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||     
T  42357384 ttgaaacatttactgcaagaattacatttttgtgaggttggtcaaatggaacttgtatgtgataatcaatcagctttacacctctcctccaatccagttt 42357285  T
Q  164 ttcacgagaggacaaaccatgtagaagttgattgtca 200  Q
    |||||||||||||||| ||| | |||||||| |||||    
T  42357284 ttcacgagaggacaaagcatattgaagttgactgtca 42357248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 22120374 - 22120532
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||| |||||| ||  |||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  22120374 aaacatttactgcaagaattaagtttttgcgaggttggtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 22120473  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
    ||||||| ||||| ||| ||||||| || ||||||||||||||||||||||| ||||||    
T  22120474 acgagagaacaaagcatatagaagtcgactgtcatttcattagggaaaagattctctct 22120532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 40542625 - 40542467
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||| |||||| ||  |||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  40542625 aaacatttactgcaagaattaagtttttgcgaggttggtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 40542526  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
    ||||||| ||||| ||| ||||||| || ||||||||||||||||||||||| ||||||    
T  40542525 acgagagaacaaagcatatagaagtcgactgtcatttcattagggaaaagattctctct 40542467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 45182543 - 45182407
Alignment:
Q  64 ttgaaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagtta 163  Q
    |||||||||||| |  | ||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||     
T  45182543 ttgaaacatttattgtaggaattacatttttgtgaggttggtcaaatggaacttgtatgtgataatcaatcagctttacacctctcctccaatccagttt 45182444  T
Q  164 ttcacgagaggacaaaccatgtagaagttgattgtca 200  Q
    |||||||||||||||| ||| | |||||||| |||||    
T  45182443 ttcacgagaggacaaagcatattgaagttgactgtca 45182407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 7929247 - 7929405
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||| |||||| ||  ||||| | ||||||| || |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  7929247 aaacatttactgcaagaattaagtttttctaaggttggccagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 7929346  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
    ||||||| ||||| ||| ||||||| || ||||||||||||||||||||||| ||||||    
T  7929347 acgagagaacaaagcatatagaagtcgactgtcatttcattagggaaaagattctctct 7929405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 67 - 223
Target Start/End: Complemental strand, 44263433 - 44263277
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    |||||||||| |||| || ||  ||||||| ||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  44263433 aaacatttaccacaaaaattaagtttttgtaaggttagtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 44263334  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctct 223  Q
    ||||||| ||| | ||| ||||||| || ||||||||||||||||||||||| ||||    
T  44263333 acgagagaacatagcatatagaagtcgactgtcatttcattagggaaaagattctct 44263277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 36500752 - 36500888
Alignment:
Q  64 ttgaaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagtta 163  Q
    |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||     
T  36500752 ttgaaacatttactgcaagaattacatttttgtgaggttggtcaaatggaacttgtatgtgataatcaatcagctttacacctctcctccaatccagttt 36500851  T
Q  164 ttcacgagaggacaaaccatgtagaagttgattgtca 200  Q
    |||||||||||||||| ||| | |||||||| |||||    
T  36500852 ttcacgagaggacaaagcatattgaagttgactgtca 36500888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 15424841 - 15424683
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||| |||||| ||  ||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  15424841 aaacatttactgcaagaattaagtttttgtaaggttggtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 15424742  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
    ||||||| ||||| ||| ||||| | || ||||||||||||||||||||||| ||||||    
T  15424741 acgagagaacaaagcatatagaattcgactgtcatttcattagggaaaagattctctct 15424683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 223
Target Start/End: Complemental strand, 12932714 - 12932558
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||| |||||| ||  |||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| | |    || |||    
T  12932714 aaacatttactgcaagaattaagtttttgtgaggttggtcagatggaactcgtatgtgataatcaatcagctttacatctctcctctaatttgatttttc 12932615  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctct 223  Q
    || |||| ||||| ||| ||||||| || |||||||||| |||||||||||| ||||    
T  12932614 acaagagaacaaagcatatagaagtcgactgtcatttcagtagggaaaagattctct 12932558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 225
Target Start/End: Complemental strand, 6756 - 6598
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||  |||||| ||  |||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  6756 aaacatttaccgcaagaattaggtttttgtgaggttggtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 6657  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
    ||||||| ||||| ||| |||||||||| ||||||||||||||| ||||||| ||||||    
T  6656 acgagagaacaaagcatatagaagttgactgtcatttcattaggaaaaagattctctct 6598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 37397 - 37555
Alignment:
Q  67 aaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagttattc 166  Q
    ||||||||||| |||||| ||  ||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||    
T  37397 aaacatttactgcaagaattaagtttttgtaaggttggtcagatggaactcgtatgtgataatcaatcagctttacacctctcctccaatccggtttttc 37496  T
Q  167 acgagaggacaaaccatgtagaagttgattgtcatttcattagggaaaagatcctctct 225  Q
    ||||||| ||||| ||| ||||| | || ||||||||||||||||||||||| ||||||    
T  37497 acgagagaacaaagcatatagaaatcgactgtcatttcattagggaaaagattctctct 37555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 10037 - 10173
Alignment:
Q  64 ttgaaacatttactacaagaactatatttttgtgaggttggtcaaatggaacttgtatgtgataaccaatcagctttacacctctcctccagtccagtta 163  Q
    ||||| |||||||| ||||||||  ||||||||||  |||||| |||||||||||| ||||||||||| |||| ||||||||| |  |||| ||||||      
T  10037 ttgaagcatttacttcaagaacttcatttttgtgaaattggtccaatggaacttgtgtgtgataaccagtcagttttacaccttttatccaatccagtct 10136  T
Q  164 ttcacgagaggacaaaccatgtagaagttgattgtca 200  Q
    |||| ||||||||||| ||| ||||||||||||||||    
T  10137 ttcatgagaggacaaagcatatagaagttgattgtca 10173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 18416493 - 18416449
Alignment:
Q  156 tccagttattcacgagaggacaaaccatgtagaagttgattgtca 200  Q
    ||||||| |||| ||||||||||| ||| ||||||||||||||||    
T  18416493 tccagtttttcatgagaggacaaaacatatagaagttgattgtca 18416449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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