View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21196_high_1 (Length: 660)

Name: NF21196_high_1
Description: NF21196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21196_high_1
NF21196_high_1
[»] chr4 (50 HSPs)
chr4 (45-644)||(27495574-27496174)
chr4 (542-598)||(27412748-27412804)
chr4 (534-598)||(27585772-27585836)
chr4 (534-593)||(27559232-27559291)
chr4 (529-574)||(27460586-27460631)
chr4 (529-574)||(27480009-27480054)
chr4 (541-640)||(27424513-27424612)
chr4 (542-644)||(27485943-27486045)
chr4 (542-640)||(27503964-27504062)
chr4 (543-640)||(27475580-27475677)
chr4 (543-644)||(27478884-27478985)
chr4 (534-598)||(27415705-27415769)
chr4 (542-598)||(27524608-27524664)
chr4 (542-598)||(27563346-27563402)
chr4 (541-640)||(27411455-27411554)
chr4 (535-574)||(27466929-27466968)
chr4 (535-574)||(27474000-27474039)
chr4 (529-572)||(27505689-27505732)
chr4 (542-617)||(27506763-27506838)
chr4 (535-598)||(27513769-27513832)
chr4 (534-593)||(27567344-27567403)
chr4 (542-617)||(27595450-27595525)
chr4 (534-593)||(27600642-27600701)
chr4 (532-598)||(27570039-27570105)
chr4 (543-593)||(27571712-27571762)
chr4 (535-572)||(27444787-27444824)
chr4 (529-598)||(27469544-27469613)
chr4 (529-574)||(27476795-27476840)
chr4 (529-598)||(27487067-27487136)
chr4 (529-574)||(27502122-27502167)
chr4 (542-590)||(27420500-27420548)
chr4 (529-641)||(27423263-27423375)
chr4 (542-590)||(27425904-27425952)
chr4 (546-590)||(27490052-27490096)
chr4 (529-573)||(27557598-27557642)
chr4 (534-593)||(27414296-27414355)
chr4 (534-593)||(27419063-27419122)
chr4 (535-574)||(27498523-27498562)
chr4 (535-574)||(27526105-27526144)
chr4 (528-574)||(17970407-17970453)
chr4 (534-640)||(27514933-27515039)
chr4 (542-596)||(27577404-27577458)
chr4 (547-596)||(27508938-27508987)
chr4 (534-574)||(27421923-27421963)
chr4 (529-593)||(27446236-27446300)
chr4 (542-590)||(27468327-27468375)
chr4 (542-598)||(27497322-27497378)
chr4 (535-595)||(27500331-27500391)
chr4 (534-574)||(27540115-27540155)
chr4 (534-598)||(27556371-27556435)
[»] chr5 (4 HSPs)
chr5 (534-644)||(1754726-1754836)
chr5 (542-644)||(1756757-1756859)
chr5 (535-572)||(1759362-1759399)
chr5 (537-617)||(1754236-1754316)
[»] chr3 (8 HSPs)
chr3 (535-597)||(55088044-55088106)
chr3 (535-574)||(50904785-50904824)
chr3 (529-589)||(48840699-48840759)
chr3 (534-590)||(50910052-50910108)
chr3 (529-590)||(38024862-38024923)
chr3 (529-590)||(38031314-38031375)
chr3 (529-574)||(55084894-55084939)
chr3 (542-638)||(38043947-38044043)
[»] chr8 (2 HSPs)
chr8 (324-424)||(20903010-20903115)
chr8 (529-590)||(21607283-21607344)
[»] chr2 (1 HSPs)
chr2 (528-574)||(3073677-3073723)
[»] chr1 (1 HSPs)
chr1 (348-424)||(29309402-29309478)


Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 45 - 644
Target Start/End: Complemental strand, 27496174 - 27495574
Alignment:
Q  45 cacaaaaatagcagctactgctggaaaaagagctggggacagacccccacggctgctaaaaattcggagatccaccctgaacaaaattaaacaa--gagc 142  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||  ||||    
T  27496174 cacaaaaacagcagctactgctggaaaaagagctggggacggacccccacggctgctaaaaattcagagagc-accctgaacaaaattaaacaaaagagc 27496076  T
Q  143 agcaataatgggagccctactgtcgataacaaacagcagcccaaagcccataacgacgccaatgggattccaacaccattcaaaatataaacacggacac 242  Q
    ||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  27496075 agcaacaatgggagccctaatatcgataacaaacagcagcccaaagcccctaacgacgccaatgggattccaacgccattcaaaatataaacatggacac 27495976  T
Q  243 aacttcaacctagtaagactccatctccaagacaatatcccatgttattctacatgccttatgttatgttatataattattttcatataatgcataccct 342  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27495975 aacttcaacctagtaagactccatctccaagacaatattctatgttattctacatgccttatgttatgttatataattattttcatgtaatgcataccct 27495876  T
Q  343 atgttattctacacgcttcaaagcagaatggctactaaagttctagtcatctttaaccctgcatagtccatttgttgaaatggcagcaaagatcacatct 442  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27495875 atgttattctacatgcttcaaagcagaatggctactaaagttctagtcatctttaaccctgcatagtccatttgttgaaatggcagcaaagatcacatct 27495776  T
Q  443 tgatagaaaattgtgtagttcatttgcatttgatattacttatttgttgttgagattaaacttccaattgagaagtgactgtaacaaaaatatcttctct 542  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27495775 tgatagaaaattgtgtagtccatttgcatttgatattacttatttgttgttgagattaaacttccaattgagaagtgactgtaacaaaaatatcttctct 27495676  T
Q  543 gcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgatatt 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27495675 gcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgatatt 27495576  T
Q  643 gg 644  Q
    ||    
T  27495575 gg 27495574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 542 - 598
Target Start/End: Complemental strand, 27412804 - 27412748
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 598  Q
    |||||||||||||||| |||||||||||||||| | |||||||||||||||||||||    
T  27412804 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagctt 27412748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 534 - 598
Target Start/End: Complemental strand, 27585836 - 27585772
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 598  Q
    ||||||| ||||||||||||||||||| ||||||||||||| | |||||||||||||||| ||||    
T  27585836 atcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggctt 27585772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 593
Target Start/End: Original strand, 27559232 - 27559291
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 593  Q
    |||||| ||||||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  27559232 atcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttc 27559291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 574
Target Start/End: Complemental strand, 27460631 - 27460586
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27460631 aaaatgtcttctctgcaaggaatggtgagaccacccattggatgat 27460586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 574
Target Start/End: Complemental strand, 27480054 - 27480009
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27480054 aaaatgtcttctctgcaaggaatggtgagaccacccattggatgat 27480009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 640
Target Start/End: Original strand, 27424513 - 27424612
Alignment:
Q  541 ctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgata 640  Q
    ||||| |||||||| ||||||||||||||||||| | ||||| | |||||||||| || |  |||||||| |||||| | |||||| | |||||||||||    
T  27424513 ctgcacggaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgata 27424612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 644
Target Start/End: Original strand, 27485943 - 27486045
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgatat 641  Q
    |||||||||||||||| |||||||| ||||||| | ||||||| |||||||| |||| |  |||||||| ||||||    ||||| | ||||||||||||    
T  27485943 tgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatat 27486042  T
Q  642 tgg 644  Q
    |||    
T  27486043 tgg 27486045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 640
Target Start/End: Complemental strand, 27504062 - 27503964
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgata 640  Q
    |||||||||||||||| |||||||||||||||| | ||||||||||||| || |||| ||  | ||| | |||||| | |||||| | |||||||||||    
T  27504062 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaagtatgata 27503964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 640
Target Start/End: Original strand, 27475580 - 27475677
Alignment:
Q  543 gcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgata 640  Q
    ||||||||||||||| |||||||| ||||||| | ||||||||||||| || |||| ||  | ||| | |||||| | |||||||| |||||||||||    
T  27475580 gcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27475677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 644
Target Start/End: Original strand, 27478884 - 27478985
Alignment:
Q  543 gcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgatatt 642  Q
    ||||||||||||||| |||||||| ||||||| | ||||||| |||||||| |||| |  |||||||| ||||||    ||||| | |||||||||||||    
T  27478884 gcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatatt 27478983  T
Q  643 gg 644  Q
    ||    
T  27478984 gg 27478985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 598
Target Start/End: Complemental strand, 27415769 - 27415705
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 598  Q
    ||||||| |||||||||||||||| |||||||| | ||||| | ||||||||||||| |||||||    
T  27415769 atcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagctt 27415705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 598
Target Start/End: Complemental strand, 27524664 - 27524608
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 598  Q
    |||| ||||||||||| |||||||||||||||| | ||||||||||||| |||||||    
T  27524664 tgcacggaatggtgaggccacccattggatgatcatatccaaactcttcctcagctt 27524608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 598
Target Start/End: Original strand, 27563346 - 27563402
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 598  Q
    |||||||||| ||||| |||||||||||||||| | |||||||||||||||| ||||    
T  27563346 tgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggctt 27563402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 640
Target Start/End: Original strand, 27411455 - 27411554
Alignment:
Q  541 ctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgata 640  Q
    ||||||||||| |||||||||||||| ||||||| | ||||||| |||||||| |||| |  ||| |||| |||||| |  ||||| | |||||||||||    
T  27411455 ctgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgata 27411554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 574
Target Start/End: Complemental strand, 27466968 - 27466929
Alignment:
Q  535 tcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  27466968 tcttctctgcaaggaatagtgagaccacccattggatgat 27466929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 574
Target Start/End: Complemental strand, 27474039 - 27474000
Alignment:
Q  535 tcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  27474039 tcttctccgcaaggaatggtgagaccacccattggatgat 27474000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 529 - 572
Target Start/End: Original strand, 27505689 - 27505732
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatg 572  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||    
T  27505689 aaaatctcttctctgcaaggaatagtgagaccacccattggatg 27505732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 542 - 617
Target Start/End: Complemental strand, 27506838 - 27506763
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaa 617  Q
    |||||||||||||||| |||||||| ||||||| | ||||||| |||||||| |||| |  |||||||| ||||||    
T  27506838 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaa 27506763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 598
Target Start/End: Original strand, 27513769 - 27513832
Alignment:
Q  535 tcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 598  Q
    ||||||||||||||||| |||||||||||||||||||||| | || || | | |||||||||||    
T  27513769 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagctt 27513832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 593
Target Start/End: Complemental strand, 27567403 - 27567344
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 593  Q
    |||||| ||||||||||| |||||||||||||||||||||| | | ||||| ||||||||    
T  27567403 atcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttc 27567344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 542 - 617
Target Start/End: Complemental strand, 27595525 - 27595450
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaa 617  Q
    |||||||||| || ||||||||||| |||||||| ||||||||||||| ||| |||| || ||| |||| ||||||    
T  27595525 tgcaaggaattgtaagaccacccatgggatgattgaatccaaactctttttctgcttgacttagtaattcttgaaa 27595450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 534 - 593
Target Start/End: Complemental strand, 27600701 - 27600642
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 593  Q
    ||||||| |||||||||| |||||||||||||||||||||||  | ||||| ||||||||    
T  27600701 atcttctttgcaaggaattgtgagaccacccattggatgattgtaaccaaattcttcttc 27600642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 532 - 598
Target Start/End: Original strand, 27570039 - 27570105
Alignment:
Q  532 atatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 598  Q
    ||||||||  |||||||||||||||| |||||||| ||||||| | |||| |||||||| |||||||    
T  27570039 atatcttcggtgcaaggaatggtgaggccacccatgggatgatcatatccgaactcttcctcagctt 27570105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 593
Target Start/End: Complemental strand, 27571762 - 27571712
Alignment:
Q  543 gcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 593  Q
    ||||||||| |||||||||||||||||||||| | ||||||| ||||||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttc 27571712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 572
Target Start/End: Original strand, 27444787 - 27444824
Alignment:
Q  535 tcttctctgcaaggaatggtgagaccacccattggatg 572  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  27444787 tcttctctgcaaggaattgtgagaccacccattggatg 27444824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 598
Target Start/End: Complemental strand, 27469613 - 27469544
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 598  Q
    ||||| ||||||||||||||||| || ||||||||||||||||| | | || |||| | |||||||||||    
T  27469613 aaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagctt 27469544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 574
Target Start/End: Complemental strand, 27476840 - 27476795
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||    
T  27476840 aaaatgtcttctctgcaaggaatagttagaccacccattggatgat 27476795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 598
Target Start/End: Complemental strand, 27487136 - 27487067
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 598  Q
    ||||| |||||| |||||||||| || ||||||||||||||||||| | || |||| | |||||||||||    
T  27487136 aaaatgtcttctttgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagctt 27487067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 574
Target Start/End: Original strand, 27502122 - 27502167
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||    
T  27502122 aaaatgtcttctctgcaaggaatagttagaccacccattggatgat 27502167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 542 - 590
Target Start/End: Complemental strand, 27420548 - 27420500
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 590  Q
    |||||||||||||||| |||||||| ||||||| | |||||||||||||    
T  27420548 tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttc 27420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 641
Target Start/End: Complemental strand, 27423375 - 27423263
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgat 628  Q
    |||| ||||||  ||||||||| |||||| |||||||| ||||||||  | ||||||||||| || |||| ||  | ||||| |||||| | |||||| |    
T  27423375 aaaacatcttccgtgcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttcctcggcttgactcaacaattcttgaaatgaaggttggt 27423276  T
Q  629 gcaagtatgatat 641  Q
     ||||||||||||    
T  27423275 tcaagtatgatat 27423263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 542 - 590
Target Start/End: Complemental strand, 27425952 - 27425904
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 590  Q
    |||||||||||||||| |||||||| ||||||| | |||||||||||||    
T  27425952 tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttc 27425904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 590
Target Start/End: Complemental strand, 27490096 - 27490052
Alignment:
Q  546 aggaatggtgagaccacccattggatgattaaatccaaactcttc 590  Q
    |||||||||||| |||||||||||||||| | |||||||||||||    
T  27490096 aggaatggtgaggccacccattggatgatcatatccaaactcttc 27490052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 573
Target Start/End: Complemental strand, 27557642 - 27557598
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatga 573  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||    
T  27557642 aaaacatcttctctgcatggaatagtgagaccacccattggatga 27557598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 593
Target Start/End: Original strand, 27414296 - 27414355
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 593  Q
    |||||| ||||| ||||| || ||||||||||||||||||| | ||||||| ||||||||    
T  27414296 atcttcactgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttc 27414355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 593
Target Start/End: Original strand, 27419063 - 27419122
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 593  Q
    |||||| | ||||||||| || ||||||||||||||||||| | ||||||| ||||||||    
T  27419063 atcttcaccgcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttc 27419122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 574
Target Start/End: Complemental strand, 27498562 - 27498523
Alignment:
Q  535 tcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  27498562 tcttctccgcaaggaatagtgagaccacccattggatgat 27498523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 535 - 574
Target Start/End: Original strand, 27526105 - 27526144
Alignment:
Q  535 tcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  27526105 tcttctctgcaaggaatagtgagaccacccgttggatgat 27526144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 574
Target Start/End: Complemental strand, 17970453 - 17970407
Alignment:
Q  528 aaaaatatcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    ||||| ||||||| |||||||||| ||||| ||||||||||||||||    
T  17970453 aaaaacatcttctgtgcaaggaattgtgaggccacccattggatgat 17970407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 640
Target Start/End: Complemental strand, 27515039 - 27514933
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaag 633  Q
    ||||||| | |||||||||||||| |||||||| ||||||| | ||||||| ||||| || | || ||  | ||| | |||||| | |||||||| ||||    
T  27515039 atcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaag 27514940  T
Q  634 tatgata 640  Q
    |||||||    
T  27514939 tatgata 27514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 596
Target Start/End: Complemental strand, 27577458 - 27577404
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagc 596  Q
    |||| ||||| |||||||||||||| || ||||| |||||||| |||||||||||    
T  27577458 tgcatggaattgtgagaccacccatagggtgattgaatccaaattcttcttcagc 27577404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 596
Target Start/End: Complemental strand, 27508987 - 27508938
Alignment:
Q  547 ggaatggtgagaccacccattggatgattaaatccaaactcttcttcagc 596  Q
    ||||||||||| |||||| ||||||||| | ||||||||||||| |||||    
T  27508987 ggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagc 27508938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 574
Target Start/End: Original strand, 27421923 - 27421963
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    |||||| ||||||||||| |||||||||||| |||||||||    
T  27421923 atcttcactgcaaggaattgtgagaccacccgttggatgat 27421963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 593
Target Start/End: Complemental strand, 27446300 - 27446236
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 593  Q
    |||| |||||| ||||||||||| | ||||||| ||||| |||||| | || |||||||||||||    
T  27446300 aaaacatcttcactgcaaggaatcgagagaccatccattcgatgatcatattcaaactcttcttc 27446236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 590
Target Start/End: Original strand, 27468327 - 27468375
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 590  Q
    |||||||||||||||| |||||||| ||||||| | ||||||| |||||    
T  27468327 tgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttc 27468375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 598
Target Start/End: Original strand, 27497322 - 27497378
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 598  Q
    |||||||||||||||| |||||  | ||||||| | ||||||||||||| |||||||    
T  27497322 tgcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttcctcagctt 27497378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 595
Target Start/End: Original strand, 27500331 - 27500391
Alignment:
Q  535 tcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcag 595  Q
    ||||||||||||||||| ||||  |||||||||||||| | | |||| |||| ||||||||    
T  27500331 tcttctctgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcag 27500391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 574
Target Start/End: Complemental strand, 27540155 - 27540115
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    |||||| |||||||||||||| || ||||||||||||||||    
T  27540155 atcttcactgcaaggaatggttagtccacccattggatgat 27540115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 598
Target Start/End: Original strand, 27556371 - 27556435
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 598  Q
    |||||| ||||| ||||| |||||||||||||| | ||||| | ||||||| |||||||| ||||    
T  27556371 atcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgctt 27556435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 534 - 644
Target Start/End: Complemental strand, 1754836 - 1754726
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaag 633  Q
    ||||||| ||||| |||||||||| |||||||||||||||| | |||||||||||||  |||||| ||  | |||   |||||| |  ||||||| ||||    
T  1754836 atcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttccgcagcttgactcaacaaggattgaaacgatggttgattcaag 1754737  T
Q  634 tatgatattgg 644  Q
    |||||||||||    
T  1754736 tatgatattgg 1754726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 644
Target Start/End: Original strand, 1756757 - 1756859
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgatat 641  Q
    |||||||||||||||| |||||||| || |||| | ||||||| ||||||||||||| ||  | ||| | |||||| |  ||||| | ||||||||||||    
T  1756757 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgatat 1756856  T
Q  642 tgg 644  Q
    |||    
T  1756857 tgg 1756859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 1759399 - 1759362
Alignment:
Q  535 tcttctctgcaaggaatggtgagaccacccattggatg 572  Q
    |||||||||||| |||||||||||||||||||||||||    
T  1759399 tcttctctgcaaagaatggtgagaccacccattggatg 1759362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 617
Target Start/End: Original strand, 1754236 - 1754316
Alignment:
Q  537 ttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaa 617  Q
    |||||| |||||||| |||||||||||||| ||||||| | || |||||| ||| |||| |||   |||||||| ||||||    
T  1754236 ttctctacaaggaatagtgagaccacccatcggatgatcatattcaaactgttcctcagatttgtttagcaatttttgaaa 1754316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 535 - 597
Target Start/End: Original strand, 55088044 - 55088106
Alignment:
Q  535 tcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagct 597  Q
    |||||| |||| ||||| ||||||||||||||||||||||| || ||||||||||| ||||||    
T  55088044 tcttctttgcatggaatagtgagaccacccattggatgattgaaaccaaactcttcctcagct 55088106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 574
Target Start/End: Original strand, 50904785 - 50904824
Alignment:
Q  535 tcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  50904785 tcttctctgcaaggaatggtgaggccacccattggatgat 50904824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 529 - 589
Target Start/End: Original strand, 48840699 - 48840759
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactctt 589  Q
    |||| ||||||| |||||||||| ||||| |||||||||||||||| | ||||||| ||||    
T  48840699 aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctt 48840759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 590
Target Start/End: Complemental strand, 50910108 - 50910052
Alignment:
Q  534 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 590  Q
    ||||||| |||||||||| ||||| |||||||||||||||| | ||||||| |||||    
T  50910108 atcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttc 50910052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 590
Target Start/End: Original strand, 38024862 - 38024923
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 590  Q
    ||||| |||||| |||||||||| ||||| ||||||||||| |||| | ||||||| |||||    
T  38024862 aaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttc 38024923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 590
Target Start/End: Original strand, 38031314 - 38031375
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 590  Q
    ||||| |||||| |||||||||| ||||| ||||||||||| |||| | ||||||| |||||    
T  38031314 aaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttc 38031375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 574
Target Start/End: Complemental strand, 55084939 - 55084894
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    |||| ||||||| |||||||||| ||||| ||||||||||||||||    
T  55084939 aaaacatcttctgtgcaaggaattgtgaggccacccattggatgat 55084894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 638
Target Start/End: Complemental strand, 38044043 - 38043947
Alignment:
Q  542 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatga 638  Q
    |||||||||| ||||| || ||||||||||||| | ||||||| ||||| || |||| ||  ||||| | |||||| | || ||||| |||||||||    
T  38044043 tgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatga 38043947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 20903115 - 20903010
Alignment:
Q  324 ttcatataatgcataccctatgtt-----attctacacgcttcaaagcagaatggctactaaagttctagtcatctttaaccctgcatagtccatttgtt 418  Q
    ||||||||||||||  ||||||||     |||||||| |||| |||| |||||||||  || ||||||| |||| ||| |||||||||||||||||||||    
T  20903115 ttcatataatgcatgacctatgttgttcaattctacatgctttaaagtagaatggcttatatagttctattcatatttgaccctgcatagtccatttgtt 20903016  T
Q  419 gaaatg 424  Q
    | ||||    
T  20903015 gtaatg 20903010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 590
Target Start/End: Original strand, 21607283 - 21607344
Alignment:
Q  529 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 590  Q
    |||||||||||| |||||||||  ||||| ||||||||||| |||| | ||||||| |||||    
T  21607283 aaaatatcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttc 21607344  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 574
Target Start/End: Complemental strand, 3073723 - 3073677
Alignment:
Q  528 aaaaatatcttctctgcaaggaatggtgagaccacccattggatgat 574  Q
    ||||| ||||||| |||||||||| ||||| ||||||||||||||||    
T  3073723 aaaaacatcttctgtgcaaggaattgtgaggccacccattggatgat 3073677  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 29309402 - 29309478
Alignment:
Q  348 attctacacgcttcaaagcagaatggctactaaagttctagtcatctttaaccctgcatagtccatttgttgaaatg 424  Q
    |||||||| |||| |||| |||||||||  || |||| || || | ||||||||||||||||| |||||||| ||||    
T  29309402 attctacatgctttaaagtagaatggcttatagagttatattcgtatttaaccctgcatagtctatttgttgtaatg 29309478  T

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