View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21196_high_13 (Length: 245)
Name: NF21196_high_13
Description: NF21196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21196_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 38802675 - 38802491
Alignment:
| Q |
1 |
cccaagaaacaacctagtagtcgttattaagtatatatatgaatagaacttttcagtataatacttgtttaaaatcttaggagaattcatatatgctaat |
100 |
Q |
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| T |
38802675 |
cccaagaaacaacctagtagtcgttattaagtatatatatgaatagaacttttcagtataatacttgtttaaaatcttaggagaattcatatatgctaat |
38802576 |
T |
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| Q |
101 |
caactcaataacattc----attacaatagattcagtatatctacttcaaaacttgggacaagttcttctactcatatatactta |
181 |
Q |
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| T |
38802575 |
caactcaataacattcattaattacaatagattcagtatatctacttcaaaacttgggacaagttcttctactcatatatactta |
38802491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 38799203 - 38799154
Alignment:
| Q |
178 |
cttaaagcctgtaacatccattcttcatgcatatggacgaatattaattc |
227 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38799203 |
cttaaagcctataacatccattcttcatgcatatggacgaatattaattc |
38799154 |
T |
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