View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21196_high_2 (Length: 480)
Name: NF21196_high_2
Description: NF21196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21196_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 20 - 348
Target Start/End: Complemental strand, 40751557 - 40751219
Alignment:
| Q |
20 |
atatcatatcatatcatacccttacaaaaacgtatgtagtggactaaacaaaatgatacacacatgcaccagaaaccactatcnnnnnnnnnnnn-aagg |
118 |
Q |
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| T |
40751557 |
atataatatcatatcatacccgtacaaaa-cgtatgtagtggactaaacaaaatgatacacacatgcaccagaaaccactatctttttttttttttaagg |
40751459 |
T |
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| Q |
119 |
aagaaaacactcatcttatctgtcattgttttaatctttcttttattaaatacaa----------taaaatcacgataatttttccgccagaaaattact |
208 |
Q |
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| T |
40751458 |
aagaaaacactcatcttatctgtcattgctttaatctttcttttattaaatacaacaaaatacaataaaatcacgataatttttccgccagaaaattact |
40751359 |
T |
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| Q |
209 |
gaatccaaatctagcttagattatggctacataaaactatacgtgtagcatttggtgctcgacaaaaaggaaatcaattaagacacttaaaattattatc |
308 |
Q |
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| T |
40751358 |
gaatccaaatctagcttagattatggctacataaaactatacgtgtagcatttgatgctcgtcaaaaaggaaatcaattaagacacttaaaattattatc |
40751259 |
T |
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| Q |
309 |
tcctctggtagaaatataaatttcttctttaaccaatata |
348 |
Q |
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| T |
40751258 |
tcctctggtagaaatataaatttcttctttaaccaatata |
40751219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 346 - 461
Target Start/End: Complemental strand, 40751178 - 40751063
Alignment:
| Q |
346 |
ataattgttgttacatgttagtactatgaaccttggtccctttatactatttgtattgtacaacaaatgagtagaccgttagattttgcgagagaatttt |
445 |
Q |
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| T |
40751178 |
ataattgttgttacatgttagtactatgaaccttggttcctttatactatttgtattgtacaacaaatgagtagaccgttagattttgcgagagaatttt |
40751079 |
T |
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| Q |
446 |
tgctttctaaatctag |
461 |
Q |
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| T |
40751078 |
tgctttctagatctag |
40751063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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