View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21196_high_5 (Length: 351)
Name: NF21196_high_5
Description: NF21196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21196_high_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 40033783 - 40033442
Alignment:
| Q |
1 |
ctatcctaaatgataagaccacatcaagtagaaatgcaattgtaccctaaattgtgcgaaagaaatttaccttgaatgaagttactcagaaaccctagaa |
100 |
Q |
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| T |
40033783 |
ctatcctaaatgataagaacacatcaaatagaaacgaaattgtaccctaaattgtgagaaagaaatttaccttgaatgaagttactcagaaaccctaga- |
40033685 |
T |
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| Q |
101 |
ccggtagagaaaatgaaatggtgagagaataaacagggttacatgatttatatggtgcagcgtcgtttttctttattttgacggaattgccctttgtttt |
200 |
Q |
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| T |
40033684 |
--------gaaaatgaaatggtgagagaataaacagggttacatgatttatatggtgcagcgtcgtttttctttattttgacggaattgccctttgtttt |
40033593 |
T |
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| Q |
201 |
tgcatgcaccgccactctctgagccccctataatatactgccatgatttctggcttcaacacaaagctggttgagaaaacttatttttggcaataactga |
300 |
Q |
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| T |
40033592 |
tgcatgcaccgccactctctgagccccctataatatactgccatgatttctggcttcaacacaaagctggttgagaaaacttatttttggcaataattga |
40033493 |
T |
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| Q |
301 |
tactatcataacaatgtatgtctttgacattaatatcatgtgtataacttt |
351 |
Q |
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| T |
40033492 |
tactatcataacaatgtatgtctttgacattaatatcatgtgtataacttt |
40033442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 40039170 - 40039124
Alignment:
| Q |
243 |
atgatttctggcttcaacacaaagctggttgagaaaacttatttttg |
289 |
Q |
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| T |
40039170 |
atgatatctggcttcaacaccaagctggttgagaaaacttatttttg |
40039124 |
T |
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