View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21196_high_8 (Length: 304)
Name: NF21196_high_8
Description: NF21196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21196_high_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 38746305 - 38746568
Alignment:
| Q |
22 |
taaggatgatttcgatcagtttgattcattatatcctctcttcccttaataacttcattaaactagcaaccatattttgaggtagaaaatatgaaaaggt |
121 |
Q |
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| T |
38746305 |
taaggatgatttcgatcagtttgattcattatatcctctcttcccttaataatttcattaaactagcaaccatattttgaggtagaaaa--------ggt |
38746396 |
T |
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| Q |
122 |
tcacactttcggtgttctttaatttgcatgagtacgcaatcacctaaactttagctggtctatccgttttgtttaagcgtcactcttttcagttt--gta |
219 |
Q |
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| T |
38746397 |
tcacactttcggtgttctttaatttgcatgagtacgcaatcacctaaactttagctggt-------------ttaagcgtcactcttttcagttttggta |
38746483 |
T |
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| Q |
220 |
tccatcattaattgtagtaacgtacagtactaacgtggattaattcaattataataaaaaataaaatgagattaacttacaacgc |
304 |
Q |
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| T |
38746484 |
tccatcattaattgtagtaacgtacagtactaacgtggattaattcaattataataaaaaataaaatgagattaacttacaacgc |
38746568 |
T |
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