View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21196_low_3 (Length: 451)
Name: NF21196_low_3
Description: NF21196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21196_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 22 - 441
Target Start/End: Original strand, 6968466 - 6968885
Alignment:
| Q |
22 |
aggaaacttttgattggaatcacgagtaagtcagttgttgttatagaagatatcgattgttcacttgatcttaccggtaagaggaagacagattctgtga |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| | || |
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| T |
6968466 |
aggaaacttttgattggaatcacgagtaagtcagttgttgttatagaagatattgattgttcgcttgatcttaccggtcagaggaagacagattcggaga |
6968565 |
T |
|
| Q |
122 |
atgacaaagaaaaagaggagcaaaatgcggaggtgaatcacgttgctgctgcttctctgcagggattacaagcagcagataaagaaaagaacaaagcaag |
221 |
Q |
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|||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968566 |
atgacaaagaaaaagaggagaaaaatgaggaggtgaatcaagttgctgctgcttctctgcagggattacaagcagcagataaagaaaagaacaaagcaag |
6968665 |
T |
|
| Q |
222 |
tcaggtaacactttctggattgttgaatttcattgatgggatttggtctgctagtactggtgagagattgattatatttactactaactatgtggagaaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968666 |
tcaggtaacactttctggattgttgaatttcattgatgggatttggtctgctagtactggtgagagattgattatatttactactaactatgtggagaaa |
6968765 |
T |
|
| Q |
322 |
cttgatcaagctttgattcgtcgtggacgaatggacatgcatattgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatctga |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6968766 |
cttgatcaagctttgattcgtcgtggacgaatggacatgcatattgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatctga |
6968865 |
T |
|
| Q |
422 |
gtattgaatctcatcctttg |
441 |
Q |
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|||||||||||||||||||| |
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| T |
6968866 |
gtattgaatctcatcctttg |
6968885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 220 - 435
Target Start/End: Original strand, 2177955 - 2178170
Alignment:
| Q |
220 |
agtcaggtaacactttctggattgttgaatttcattgatgggatttggtctgctagtactggtgagagattgattatatttactactaactatgtggaga |
319 |
Q |
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|||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||| ||||| |
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| T |
2177955 |
agtcagataacacttccaggattgttgaatttcattgatgggatttggtcagctagtactggtgagaggttaattatattcactactaactatgcggaga |
2178054 |
T |
|
| Q |
320 |
aacttgatcaagctttgattcgtcgtggacgaatggacatgcatattgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatct |
419 |
Q |
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|||||||||| ||||| ||| |||| ||| |||||||||||| ||| || ||| |||| ||| ||||||||||||||||||||||||||| ||| ||||| |
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| T |
2178055 |
aacttgatcatgctttaatttgtcgaggaagaatggacatgcttatcgaattgccttattgttgttttgatggattcaaaatgttggcaacgaagtatct |
2178154 |
T |
|
| Q |
420 |
gagtattgaatctcat |
435 |
Q |
| |
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|||| ||||||||||| |
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| T |
2178155 |
gagtcttgaatctcat |
2178170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 318 - 441
Target Start/End: Complemental strand, 1000502 - 1000375
Alignment:
| Q |
318 |
gaaacttgatcaagctttgattcgtcgtggacgaatggacatgcat----attgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | ||||||| |
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| T |
1000502 |
gaaacttgatcaagctttgattcgtcgtggacgaatggacatgcatgcatattgagttgtcttattgtggttttgatggattcaaaatgctagcaatgag |
1000403 |
T |
|
| Q |
414 |
ttatctgagtattgaatctcatcctttg |
441 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
1000402 |
ttatctgagtattgaatctcatcctttg |
1000375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 271 - 435
Target Start/End: Complemental strand, 51316361 - 51316192
Alignment:
| Q |
271 |
gctagtactggtgagagattgattatatttactactaactatgtggagaaacttgatcaagctttgattcgtcgtggacgaat-----ggacatgcatat |
365 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |||||| | || |||| ||| |||||||| |
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|
| T |
51316361 |
gctagtactcatgagagattgattatatttactactaactatgtggagaaacttaatcatgctctaattcgtagatgaagaatataatggatatgcatat |
51316262 |
T |
|
| Q |
366 |
tgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatctgagtattgaatctcat |
435 |
Q |
| |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51316261 |
tgaattgtcttattgtggttttgatggattcaaaatgttggcaatgaattatctgagtcttgaatctcat |
51316192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 2177804 - 2177906
Alignment:
| Q |
22 |
aggaaacttttgattggaatcacgagtaagtcagttgttgttatagaagatatcgattgttcacttgatcttaccggtaagaggaagacagattctgtga |
121 |
Q |
| |
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|||||||||||||||||||||| ||| | || ||||||||||| |||| ||| |||| || ||||||||||| ||| | |||||||||| ||||| || |
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| T |
2177804 |
aggaaacttttgattggaatcaaaagtgaatcggttgttgttattgaagctattgattctttgcttgatcttacaggttaaaggaagacaggttctgaga |
2177903 |
T |
|
| Q |
122 |
atg |
124 |
Q |
| |
|
||| |
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|
| T |
2177904 |
atg |
2177906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 2829147 - 2829194
Alignment:
| Q |
225 |
ggtaacactttctggattgttgaatttcattgatgggatttggtctgc |
272 |
Q |
| |
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|||||| |||||||| ||||||||||| |||||||||||||||||||| |
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| T |
2829147 |
ggtaactctttctggtttgttgaattttattgatgggatttggtctgc |
2829194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 2833073 - 2833023
Alignment:
| Q |
219 |
aagtcaggtaacactttctggattgttgaatttcattgatgggatttggtc |
269 |
Q |
| |
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|||| ||||||| |||||||| |||||||||||||||||||| |||||||| |
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| T |
2833073 |
aagtaaggtaactctttctggtttgttgaatttcattgatggaatttggtc |
2833023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 44396190 - 44396278
Alignment:
| Q |
21 |
gaggaaacttttgattggaatcacgagtaagtcagttgttgttatagaagatatcgattgttcacttgatcttaccggtaagaggaaga |
109 |
Q |
| |
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|||||| |||||||||| | || ||||||||| || ||||||| ||||| || |||||||||||||||||||| ||| | ||||||| |
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|
| T |
44396190 |
gaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaaga |
44396278 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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