View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21196_low_4 (Length: 420)
Name: NF21196_low_4
Description: NF21196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21196_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 44331138 - 44331321
Alignment:
| Q |
11 |
cacagacaaacgatctccaactaaactaacttgaggttcatatgactaatgcagtgaatcgatcattaattatagcaaataacaataataattaaaggat |
110 |
Q |
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| T |
44331138 |
cacagacaaacgatctccaactaaactaacttgaggttcatgtgactaatgcagtgaatccatcattaattatagcaaataacaataataattaaaggat |
44331237 |
T |
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| Q |
111 |
ttgtaaaggaagcgattagaataactagaaattagggttttgaaaagtgaaatcaagcagatttgaaattgatgaatgaattgt |
194 |
Q |
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| T |
44331238 |
ttgtaaaggaagcgattagaataactagaaattagggttttgaaaagtgaaatcaagcagatttgaaattaatgaatgaattgt |
44331321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 236 - 402
Target Start/End: Original strand, 44331368 - 44331534
Alignment:
| Q |
236 |
ggattgaaggtacctctttggaatggtgaagacattcgaagtaatcttcacggaggagaacgcaatctttgggctctctacaagtagacatgcactcgct |
335 |
Q |
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| T |
44331368 |
ggattgaaggtacctctttggaatggtgaagacattcgaagtaatcttcacggaggagaacacaatctttgggctctctacaagtagacatgcactcgct |
44331467 |
T |
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| Q |
336 |
gaaatcgatccagaaatcgtagcaacgacctttgttaccagtgattccccaacctgacgccatttct |
402 |
Q |
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| T |
44331468 |
gaaatcgatccagaaatcgtagcaacgacctttgttaccagtgattccccaacctgacgccatttct |
44331534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 20153719 - 20153857
Alignment:
| Q |
11 |
cacagacaaacgatctccaactaaactaacttgaggttcatatgactaatgcagtgaatcgatcattaattatagcaaataacaataataattaaaggat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20153719 |
cacagacaaacgatctccaactaaactaacttgaggttcatgtgactaatgcagtgaatccatcattaattatagcaaataacaataataattaaaggat |
20153818 |
T |
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| Q |
111 |
ttgtaaaggaagcgattagaataactagaaattagggtt |
149 |
Q |
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| T |
20153819 |
ttgtaaaggaagcgattagaataactagaaattagggtt |
20153857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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