View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21196_low_6 (Length: 345)
Name: NF21196_low_6
Description: NF21196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21196_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 25 - 329
Target Start/End: Original strand, 38331781 - 38332098
Alignment:
| Q |
25 |
atatccttatcaacacaccggtagcaatttactag-aagcaggagta------tattggattccagcagatgaaaggggaaaagaaatcgttggtggaag |
117 |
Q |
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| T |
38331781 |
atatccttatcaacacaccggtagcaatttactagtaagcaggagtaggagtatattggattccagcagatgaaaggggaaaagaaatcggtggtggaag |
38331880 |
T |
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| Q |
118 |
aaatgacacgtgtaatataaattcctctattctatctatcgcttcaa------aataatatccaaaatccaatccaaacctattcctcttcttcaccacc |
211 |
Q |
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| T |
38331881 |
aaatgacacgtgtaatataaattcctctattctatctatcgcttcaaaatcaaaataatatccaaaatccaatccaaacctattcctcttcttcaccacc |
38331980 |
T |
|
| Q |
212 |
atcaacaacgcgatttagttccgttgttgaactcgaaatggctattttctctgcaaccctaggttccttcggtgccatctccttcctctcatcttcacaa |
311 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
38331981 |
atcaacaacgcgatttggttccgttgttgaactcgaaatggctattttctctgcaaccctaggttcctttggtgccatttccttcctctcatcttcacaa |
38332080 |
T |
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| Q |
312 |
acacaacaacacgatcct |
329 |
Q |
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||||||||||||||||| |
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| T |
38332081 |
tcacaacaacacgatcct |
38332098 |
T |
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