View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_high_14 (Length: 492)
Name: NF21197_high_14
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 35 - 464
Target Start/End: Complemental strand, 23168240 - 23167810
Alignment:
| Q |
35 |
aaaattgggttgaactggataaaggttaaaagacatattactcacacatgcgctattttgacttgtgcatgatgacttcaactgtgaaatctatgtatct |
134 |
Q |
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| T |
23168240 |
aaaattgggttgaactggagaaggattaagagacatattactcacacatgcgctatttttacttgtgcatgatgacttcgactgtgaaatctatgtatct |
23168141 |
T |
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| Q |
135 |
gggtggcgagagtcgacacactcaaagaatgaatgtgattgctagtaggctgtattaagtgatccaannnnnnnggtgcaccttttgtattaaccttttc |
234 |
Q |
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| T |
23168140 |
gggtggcgagagtcgacacactcaaagaatgaatgtgattgctagtaggctgtattaaatgatccaattttcttggtgcaccttttgtattaaccttttc |
23168041 |
T |
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| Q |
235 |
taaatgtggacacatagag-ttctttctggtaaaacaaattgcaaaataacaaataaattttcaaaag---agaatataatatgcgatcaacattatatc |
330 |
Q |
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| T |
23168040 |
taaatgtggacacatagaggttgttt---gtaaaacaaattgctaaataacaaataaattttcaaaagagaagaacataatatgcgatcaacattatatc |
23167944 |
T |
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| Q |
331 |
aatcttttatgtnnnnnnnntccactgccactatatatggagctgttttaaagagctttttcnnnnnnngtattctcctccattggtctaaatctctcac |
430 |
Q |
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|||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
23167943 |
aatcttttatgtaaaaaaaatccgctgccactatatacggagctgttttaaagagctttttcaaaaaaagtattctcctccatcggtctaaatctctcac |
23167844 |
T |
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| Q |
431 |
tttttgttgaaatatcccaaagaatatgccattg |
464 |
Q |
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| T |
23167843 |
tttttgttgaaatatcccaaagaatatgccattg |
23167810 |
T |
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