View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21197_high_15 (Length: 490)

Name: NF21197_high_15
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21197_high_15
NF21197_high_15
[»] chr4 (17 HSPs)
chr4 (18-480)||(40155534-40155997)
chr4 (145-255)||(54871800-54871910)
chr4 (145-261)||(18920918-18921034)
chr4 (145-261)||(33100905-33101021)
chr4 (145-265)||(45636440-45636560)
chr4 (145-263)||(8813044-8813162)
chr4 (144-265)||(13609924-13610045)
chr4 (149-263)||(25131407-25131521)
chr4 (149-263)||(5633866-5633980)
chr4 (145-219)||(13156452-13156526)
chr4 (149-254)||(19845556-19845661)
chr4 (213-263)||(5726216-5726266)
chr4 (213-263)||(5760074-5760124)
chr4 (413-477)||(13156710-13156774)
chr4 (187-245)||(32808371-32808429)
chr4 (187-235)||(17188475-17188523)
chr4 (187-235)||(39867180-39867228)
[»] chr7 (15 HSPs)
chr7 (145-307)||(37136629-37136791)
chr7 (149-264)||(16559101-16559216)
chr7 (149-264)||(16606446-16606561)
chr7 (145-260)||(27853886-27854001)
chr7 (149-280)||(29375657-29375788)
chr7 (149-275)||(34236232-34236358)
chr7 (144-265)||(9627201-9627322)
chr7 (145-257)||(40617715-40617817)
chr7 (149-265)||(14316377-14316493)
chr7 (149-264)||(10065325-10065440)
chr7 (149-263)||(38153674-38153788)
chr7 (149-265)||(40681715-40681831)
chr7 (413-476)||(40617496-40617559)
chr7 (187-235)||(17262245-17262293)
chr7 (213-261)||(31423199-31423247)
[»] scaffold0225 (2 HSPs)
scaffold0225 (145-276)||(5511-5642)
scaffold0225 (418-476)||(5784-5842)
[»] chr8 (6 HSPs)
chr8 (145-265)||(38737430-38737550)
chr8 (145-261)||(7180007-7180117)
chr8 (149-265)||(460058-460174)
chr8 (202-276)||(29287850-29287924)
chr8 (145-263)||(43775259-43775377)
chr8 (149-281)||(16839308-16839440)
[»] chr3 (14 HSPs)
chr3 (145-260)||(6924954-6925069)
chr3 (145-261)||(6893199-6893315)
chr3 (145-261)||(42807266-42807382)
chr3 (145-261)||(29543363-29543479)
chr3 (152-268)||(23046217-23046333)
chr3 (172-275)||(38456735-38456838)
chr3 (149-274)||(35502943-35503068)
chr3 (145-262)||(45967947-45968064)
chr3 (213-263)||(18649986-18650036)
chr3 (213-263)||(18689406-18689456)
chr3 (149-219)||(22533022-22533092)
chr3 (224-261)||(22533087-22533124)
chr3 (416-456)||(6893470-6893510)
chr3 (413-445)||(38456565-38456597)
[»] chr6 (12 HSPs)
chr6 (145-261)||(5668342-5668458)
chr6 (145-261)||(18016709-18016825)
chr6 (144-261)||(32534027-32534134)
chr6 (144-281)||(2540531-2540668)
chr6 (151-258)||(10304142-10304249)
chr6 (413-476)||(18016494-18016557)
chr6 (149-275)||(12687197-12687323)
chr6 (149-263)||(34600861-34600975)
chr6 (149-263)||(34627406-34627520)
chr6 (208-281)||(9906228-9906301)
chr6 (160-256)||(34722145-34722241)
chr6 (416-475)||(32533813-32533872)
[»] chr5 (5 HSPs)
chr5 (145-266)||(22935613-22935734)
chr5 (145-260)||(7962122-7962227)
chr5 (145-260)||(32018962-32019077)
chr5 (149-261)||(30723488-30723600)
chr5 (149-221)||(25325139-25325211)
[»] chr1 (17 HSPs)
chr1 (145-265)||(2654692-2654812)
chr1 (145-261)||(5677727-5677843)
chr1 (187-262)||(31068733-31068808)
chr1 (145-211)||(12687210-12687276)
chr1 (145-264)||(42475323-42475442)
chr1 (145-265)||(23451136-23451255)
chr1 (145-263)||(52249289-52249404)
chr1 (150-263)||(25529118-25529231)
chr1 (213-265)||(22584162-22584214)
chr1 (149-281)||(27364712-27364844)
chr1 (149-261)||(36099537-36099649)
chr1 (149-256)||(51799563-51799670)
chr1 (413-476)||(12687462-12687525)
chr1 (418-476)||(5677512-5677570)
chr1 (187-257)||(32352779-32352849)
chr1 (186-235)||(14976163-14976212)
chr1 (149-261)||(29644335-29644446)
[»] chr2 (14 HSPs)
chr2 (181-270)||(40430002-40430091)
chr2 (145-261)||(1998670-1998786)
chr2 (145-260)||(24738823-24738938)
chr2 (145-265)||(21579621-21579741)
chr2 (172-266)||(12605894-12605988)
chr2 (202-265)||(30504795-30504858)
chr2 (149-235)||(45717775-45717861)
chr2 (149-281)||(20947117-20947250)
chr2 (149-236)||(12807582-12807669)
chr2 (213-280)||(14440322-14440389)
chr2 (149-235)||(26245983-26246068)
chr2 (187-265)||(39116472-39116550)
chr2 (187-235)||(15139534-15139582)
chr2 (213-261)||(26146812-26146860)
[»] scaffold0233 (1 HSPs)
scaffold0233 (149-264)||(10979-11094)
[»] scaffold0155 (1 HSPs)
scaffold0155 (187-235)||(32788-32836)
[»] scaffold0131 (1 HSPs)
scaffold0131 (202-257)||(4040-4095)
[»] scaffold0029 (1 HSPs)
scaffold0029 (202-257)||(134338-134393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (202-257)||(312165-312220)
scaffold0002 (202-257)||(327619-327674)
[»] scaffold0016 (1 HSPs)
scaffold0016 (213-261)||(28371-28419)


Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Complemental strand, 40155997 - 40155534
Alignment:
Q  18 ctagttaaccacctttatgtattacgaatttataattcataaactgaattgtccattgaattttagctatgaggatagaaaaaatgtgattggaagggga 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40155997 ctagttaaccacctttatgtattacgaatttataattcatgaactgaattgtccattgaattttagctatgaggatagaaaaaatgtgattggaagggga 40155898  T
Q  118 gactttactaagggggagacttttcaaagtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40155897 gactttactaagggggagacttttcaaagtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgtt 40155798  T
Q  218 ggcggttgttggtggatagggatagtttgtggtttagggtgttgtcggtgaggtatggtatggatggtggccggttgagtgttggagggcacaatgcctc 317  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40155797 ggcggttgttggtggatatggatagtttgtggtttagggtgttgtcggtgaggtatggtatggatggtggccggttgagtgttggagggcgcaatgcctc 40155698  T
Q  318 gacatggtggagggacatctctgctttgcgcgaggctgggtggtttcatagtcatgtcagtcgctctctgggtgatggtactaaaacg-nnnnnnnggac 416  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||        ||||    
T  40155697 agcatggtggagggacatctctgctttgcgcgaggctgggtggtttcatagtcatgtcagccgctctctgggtgatggtactaaaacgttttttttggac 40155598  T
Q  417 ggatgtttgggtgggtgaagtgtcgttacgggatagatttaccaggttgtacgagttgtctgtg 480  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40155597 ggatgtttgggtgggtgaagtgtcgttacgggatagatttaccaggttgtgcgagttgtctgtg 40155534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 54871910 - 54871800
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||| ||||||| ||||||||||| |    
T  54871910 agtcaggaggttggaggtttgggggttaggagaataaaagagtttaatttagcattgttagggaagtggtgttggcgggtgttggtagatagggatagct 54871811  T
Q  245 tgtggtttagg 255  Q
    | |||||||||    
T  54871810 tatggtttagg 54871800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 18920918 - 18921034
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||||||| |||| |||||||| ||| | ||||||||||||||| ||||||||| ||| ||| || ||||||| |||||||||||||    
T  18920918 agtcaggaggttggaggtttgggggtaaggagaataaaataatttaatttagcattactagggaagtggtgctggagggtgttggtagatagggatagtt 18921017  T
Q  245 tgtggtttagggtgttg 261  Q
    |||||||||||||||||    
T  18921018 tgtggtttagggtgttg 18921034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 33100905 - 33101021
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||||||| |||| |||||||| ||||| |||||||||| ||| |||||||||| |||||||||| |||||||||| | ||| ||||    
T  33100905 agtcaggaggttggaggtttgagggtaaggagaataaaagaatttaatttagaattgttagggaagtggtgttggcgggtgttggtggagaaggagagtt 33101004  T
Q  245 tgtggtttagggtgttg 261  Q
    |||||||||||||||||    
T  33101005 tgtggtttagggtgttg 33101021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 45636440 - 45636560
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||| ||||| |||| ||||||||||||||| |||||||||||||||  |  ||||||||| ||||||| | || || | |||||| |||||||    
T  45636440 agtcaggaggctggagttttgggggttaggagaattagagattttaatttagctcttctagggaagtggtgttggagattattaggggatagagatagtt 45636539  T
Q  245 tgtggtttagggtgttgtcgg 265  Q
    |||||||||||||||||||||    
T  45636540 tgtggtttagggtgttgtcgg 45636560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 263
Target Start/End: Original strand, 8813044 - 8813162
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||| ||| |||| | |||||||| |||||||||||||||  |  |||| ||||  |||||| | |||||||||||||| |||||||    
T  8813044 agtcaggaggttggaggattgggggtaacgagaattagagattttaatttagcccttataggtaagtgatgttggagattgttggtggatagagatagtt 8813143  T
Q  245 tgtggtttagggtgttgtc 263  Q
    ||||||||| |||||||||    
T  8813144 tgtggtttatggtgttgtc 8813162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 144 - 265
Target Start/End: Complemental strand, 13610045 - 13609924
Alignment:
Q  144 aagtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagt 243  Q
    ||||||||||||||| |||||| || | ||||||||||  |||||| ||  | | ||||||||||||| ||||||| || ||||| |||| |||||||||    
T  13610045 aagtcaggaggttggcggtttggggctaaggagaattagggatttttatacatctttattagggaagtggtgttggaggctgttgatggagagggatagt 13609946  T
Q  244 ttgtggtttagggtgttgtcgg 265  Q
    || |||||||||||||||||||    
T  13609945 ttatggtttagggtgttgtcgg 13609924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 25131521 - 25131407
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| ||||||||||   | |||||| | || | |||||||||||   |||||||||| ||||||||||||||  |||||||    
T  25131521 aggaggttggtggtttgggggtaaggagaattaggaaatttaatgttgcttcattagggaagtgtcgttggcggttattggtggatagggagtgtttgtg 25131422  T
Q  249 gtttagggtgttgtc 263  Q
    |||||||||| ||||    
T  25131421 gtttagggtgatgtc 25131407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 5633866 - 5633980
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||||||||||  ||| ||||||||||  || ||||||   ||||||||||| |||| ||||||| | ||||| || || | ||| ||||||||    
T  5633866 aggaggttggaggtttggaggtaaggagaattagtgagtttaatagtgcattattaggtaagtggtgttggagattgttagttgagaaggagagtttgtg 5633965  T
Q  249 gtttagggtgttgtc 263  Q
    || ||||||||||||    
T  5633966 gtatagggtgttgtc 5633980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 13156452 - 13156526
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttgg 219  Q
    ||||||||||||||||||||| ||||  || |||| ||||| |||||| |||| ||||||||||||| |||||||    
T  13156452 agtcaggaggttggaggtttgggggtatggtgaataaaagaatttaatctagctttattagggaagtggtgttgg 13156526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 19845556 - 19845661
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| | |||| |||| ||||||||||  || ||||| |  ||  | ||||| |||| ||||||||||||||||||||| ||||||||||| ||    
T  19845556 aggaggttggtgatttgagggtaaggagaattagggagtttaactatgctcttttaggtaagtggtgttggcggttgttggtggagagggatagtttttg 19845655  T
Q  249 gtttag 254  Q
    ||||||    
T  19845656 gtttag 19845661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 5726216 - 5726266
Alignment:
Q  213 gtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtc 263  Q
    ||||||||||||||||||||| | ||| ||||| |||||||||||||||||    
T  5726216 gtgttggcggttgttggtggagaaggagagtttatggtttagggtgttgtc 5726266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 5760074 - 5760124
Alignment:
Q  213 gtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtc 263  Q
    ||||||||||||||||||||| | ||| ||||| |||||||||||||||||    
T  5760074 gtgttggcggttgttggtggagaaggagagtttatggtttagggtgttgtc 5760124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 477
Target Start/End: Original strand, 13156710 - 13156774
Alignment:
Q  413 ggacggatgtttgggtgggtgaagtgtcgttacgggatagatttaccaggttgtacgagttgtct 477  Q
    ||||||| |||||||||||||||||||| || ||| | |||||||| |||||||| || ||||||    
T  13156710 ggacggacgtttgggtgggtgaagtgtcattgcggaaaagatttactaggttgtatgatttgtct 13156774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 32808429 - 32808371
Alignment:
Q  187 tttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagttt 245  Q
    ||||||||  ||||||||||||||| ||||||| |||||||| | ||||| ||||||||    
T  32808429 tttaattttacattattagggaagtggtgttggaggttgttgatagatagagatagttt 32808371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 17188523 - 17188475
Alignment:
Q  187 tttaatttagcattattagggaagtagtgttggcggttgttggtggata 235  Q
    ||||||||| | ||||||||||||| ||||||| |||||||||| ||||    
T  17188523 tttaatttatctttattagggaagtggtgttggaggttgttggttgata 17188475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 39867180 - 39867228
Alignment:
Q  187 tttaatttagcattattagggaagtagtgttggcggttgttggtggata 235  Q
    ||||||||| | ||||||||||||| ||||||| |||||||||| ||||    
T  39867180 tttaatttatctttattagggaagtggtgttggaggttgttggttgata 39867228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 145 - 307
Target Start/End: Original strand, 37136629 - 37136791
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||||||| |||||| |||| |||||||| ||||| ||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||||||    
T  37136629 agtcaggaggttggtggtttgggggtaaggagaataaaagagtttaatttagcattattagggaagtggtgttggagggcgttggtggatagggatagtt 37136728  T
Q  245 tgtggtttagggtgttgtcggtgaggtatggtatggatggtggccggttgagtgttggagggc 307  Q
    |||||||||||||| || ||| |||| ||||  |||| || ||||||||| ||| ||| ||||    
T  37136729 tgtggtttagggtgctggcggcgaggaatgggttggagggaggccggttgtgtgatggtgggc 37136791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 264
Target Start/End: Original strand, 16559101 - 16559216
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| |||||||||| ||| ||||||   ||  ||||||| |||| ||||||| |||||||||| |||||||||||||||||    
T  16559101 aggaggttggtggtttgggggtaaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttggtagatagggatagtttgtg 16559200  T
Q  249 gtttagggtgttgtcg 264  Q
    ||||||||||||||||    
T  16559201 gtttagggtgttgtcg 16559216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 16606561 - 16606446
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| |||||||||| ||| ||||||   ||  ||||||| |||| ||||||| |||||||||| |||||||||||||||||    
T  16606561 aggaggttggtggtttgggggtaaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttggtagatagggatagtttgtg 16606462  T
Q  249 gtttagggtgttgtcg 264  Q
    ||||||||||||||||    
T  16606461 gtttagggtgttgtcg 16606446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 260
Target Start/End: Original strand, 27853886 - 27854001
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||||||| ||||||  ||| |||||||| ||||| ||||||||||| ||||||||||||| ||||||| || |||||  ||| || |||||||    
T  27853886 agtcaggaggttggtggtttggaggtaaggagaataaaagaatttaatttagctttattagggaagtggtgttggagggtgttgacggagagagatagtt 27853985  T
Q  245 tgtggtttagggtgtt 260  Q
    ||||||||||||||||    
T  27853986 tgtggtttagggtgtt 27854001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 280
Target Start/End: Complemental strand, 29375788 - 29375657
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    ||||||||||||||||| |||| ||||||||||  || |||||| | || ||| ||||||||| |||||||||| ||||||||||  |||||||||||||    
T  29375788 aggaggttggaggtttgggggtaaggagaattagggagtttaatatggcgttactagggaagtggtgttggcggatgttggtggagcgggatagtttgtg 29375689  T
Q  249 gtttagggtgttgtcggtgaggtatggtatgg 280  Q
    ||||| ||||||||| |  || ||||||||||    
T  29375688 gtttaaggtgttgtcagccagttatggtatgg 29375657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 34236232 - 34236358
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| ||||||||||  || ||||||||||| || |||| ||||| ||||||| |||||||||  ||||  || ||||||||    
T  34236232 aggaggttggtggtttgggggtaaggagaattagggagtttaatttagcgttgttagagaagtggtgttggaggttgttgggtgataccgagagtttgtg 34236331  T
Q  249 gtttagggtgttgtcggtgaggtatgg 275  Q
    ||||||||||||||||| ||| |||||    
T  34236332 gtttagggtgttgtcggcgagctatgg 34236358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 144 - 265
Target Start/End: Original strand, 9627201 - 9627322
Alignment:
Q  144 aagtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagt 243  Q
    ||||||||||||||| |||||| || | ||||||||||  |||||| ||  | | ||||||||||||| ||||||| || ||||| |||| |||||||||    
T  9627201 aagtcaggaggttggcggtttggggctaaggagaattagggatttttatacatctttattagggaagtggtgttggaggctgttgatggagagggatagt 9627300  T
Q  244 ttgtggtttagggtgttgtcgg 265  Q
    || |||||||||||||||||||    
T  9627301 ttatggtttagggtgttgtcgg 9627322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 40617817 - 40617715
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||| |||||          | |||||||||||||||||||||    
T  40617817 agtcaggaggttggaggtttgagggtaaggagaataaaagaatttaatttagcattattagagaagt----------ggtgttggtggatagggatagtt 40617728  T
Q  245 tgtggtttagggt 257  Q
    |||||||||||||    
T  40617727 tgtggtttagggt 40617715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 149 - 265
Target Start/End: Complemental strand, 14316493 - 14316377
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| |||||||||| ||| |||||||| |||||| |||| || |  |||||| ||||| | || |||||| ||||||||||    
T  14316493 aggaggttggtggtttgggggtaaggagaattagagagtttaattttgcattactaggaaaatgttgttggaggttgctagttgataggaatagtttgtg 14316394  T
Q  249 gtttagggtgttgtcgg 265  Q
    |||||||||| ||||||    
T  14316393 gtttagggtgatgtcgg 14316377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 10065440 - 10065325
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    ||||||||||  ||||| |||| ||||||||||  || |||||| ||||  | | |||||||| ||||||| | ||||||||||| || ||||| |||||    
T  10065440 aggaggttggcagtttgggggtaaggagaattagtgactttaatatagctctttcagggaagtggtgttggagattgttggtggagagagataggttgtg 10065341  T
Q  249 gtttagggtgttgtcg 264  Q
    ||||||||||||||||    
T  10065340 gtttagggtgttgtcg 10065325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 38153674 - 38153788
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| ||||||||||  || |||||| | ||||| |||||||||||||||||| ||||| ||   ||||    |||||||||    
T  38153674 aggaggttggtggtttgggggtaaggagaattagtgagtttaatattgcattgttagggaagtagtgttggaggttgatgacagatactagtagtttgtg 38153773  T
Q  249 gtttagggtgttgtc 263  Q
    |||||||||||||||    
T  38153774 gtttagggtgttgtc 38153788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 265
Target Start/End: Original strand, 40681715 - 40681831
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| ||||   |||| ||||||||||  || ||||||   |||||||||||||||| |||||||| ||||||| | || | ||| ||||||||    
T  40681715 aggaggttggtggttatggggtgaggagaattagggagtttaatagtgcattattagggaagtggtgttggcagttgttgattgaaaaggagagtttgtg 40681814  T
Q  249 gtttagggtgttgtcgg 265  Q
    || ||||||||| ||||    
T  40681815 gtatagggtgttatcgg 40681831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 476
Target Start/End: Complemental strand, 40617559 - 40617496
Alignment:
Q  413 ggacggatgtttgggtgggtgaagtgtcgttacgggatagatttaccaggttgtacgagttgtc 476  Q
    ||||||||||||||||||||||  |||||||||  ||||||||||  |||||||| ||||||||    
T  40617559 ggacggatgtttgggtgggtgagttgtcgttacatgatagatttagtaggttgtatgagttgtc 40617496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 17262245 - 17262293
Alignment:
Q  187 tttaatttagcattattagggaagtagtgttggcggttgttggtggata 235  Q
    ||||||||| |||| |||||||||| ||| ||| |||||||||||||||    
T  17262245 tttaatttatcattgttagggaagtggtgctggaggttgttggtggata 17262293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 31423247 - 31423199
Alignment:
Q  213 gtgttggcggttgttggtggatagggatagtttgtggtttagggtgttg 261  Q
    ||||||||||||||| || ||||||||| ||||||||  ||||||||||    
T  31423247 gtgttggcggttgttagttgatagggatggtttgtggcgtagggtgttg 31423199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 5511 - 5642
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||||||| |||  |||||| | ||||| ||||||||||| ||||||||||||| |||||||||| |||||||||| | ||| ||||    
T  5511 agtcaggaggttggaggtttgggggcaaggagattaaaagaatttaatttagctttattagggaagtggtgttggcgggtgttggtggagaaggagagtt 5610  T
Q  245 tgtggtttagggtgttgtcggtgaggtatggt 276  Q
    ||||||||||||||||| ||| |||| |||||    
T  5611 tgtggtttagggtgttggcggcgaggaatggt 5642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 476
Target Start/End: Original strand, 5784 - 5842
Alignment:
Q  418 gatgtttgggtgggtgaagtgtcgttacgggatagatttaccaggttgtacgagttgtc 476  Q
    ||||||||||||||||| ||||||||| ||| ||||||||  || ||||| ||||||||    
T  5784 gatgtttgggtgggtgaggtgtcgttaagggttagatttaatagattgtatgagttgtc 5842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 38737430 - 38737550
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||  |||||||||||| ||||||| | || || |||||| | |||||||    
T  38737430 agtcaggaggttggaggtttgggggttaggagaattagagattttaatttagctctattagggaagtggtgttggagattattagtggatcgagatagtt 38737529  T
Q  245 tgtggtttagggtgttgtcgg 265  Q
    |||||| ||||||||| ||||    
T  38737530 tgtggtatagggtgttatcgg 38737550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 7180117 - 7180007
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||||| |||||||| |||| |||||| | ||||| ||      ||| ||||||||||||| |||||||||| |||||||||||||||||||||    
T  7180117 agtcaggaggtttgaggtttgggggtaaggagactaaaagaatt------agcgttattagggaagtggtgttggcgggtgttggtggatagggatagtt 7180024  T
Q  245 tgtggtttagggtgttg 261  Q
    | |||||||||||||||    
T  7180023 tatggtttagggtgttg 7180007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 265
Target Start/End: Complemental strand, 460174 - 460058
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| ||||||||||  || |||||||  ||||||||||| || | || |||| |||||||||| ||||| |||||||||||    
T  460174 aggaggttggtggtttgggggtaaggagaattagggagtttaattatgcattattaggaaaattgtattggaggttgttggttgatagagatagtttgtg 460075  T
Q  249 gtttagggtgttgtcgg 265  Q
    |||||||||| ||||||    
T  460074 gtttagggtgatgtcgg 460058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 29287924 - 29287850
Alignment:
Q  202 ttagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtcggtgaggtatggt 276  Q
    |||||||||| ||||||||||||  | ||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  29287924 ttagggaagtggtgttggcggttacttgtggatagggagagtttttggtttagggtgttgtcggtgaggtatggt 29287850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 263
Target Start/End: Original strand, 43775259 - 43775377
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||||||| |||||| |||| ||||||||||  || |||||| | ||  | ||||||||||  || ||| | |||||||| ||||| |||||||    
T  43775259 agtcaggaggttggcggtttgggggtaaggagaattagggactttaatattgctctgttagggaagtgatgctggagattgttggttgatagtgatagtt 43775358  T
Q  245 tgtggtttagggtgttgtc 263  Q
    |||||||||||||||||||    
T  43775359 tgtggtttagggtgttgtc 43775377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 16839308 - 16839440
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| |||||||||| ||| |||||| | || ||| | || ||||  ||||||||| ||||| |||| ||||| ||||||||    
T  16839308 aggaggttggtggtttgggggtaaggagaattagagagtttaatatcgctttacttggtaagtgatgttggcggatgttgatggagagggagagtttgtg 16839407  T
Q  249 gtttagggtgttgtcggtgaggtatggtatgga 281  Q
    ||||| ||||||||| |  ||||||||| ||||    
T  16839408 gtttaaggtgttgtcagctaggtatggtttgga 16839440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 145 - 260
Target Start/End: Original strand, 6924954 - 6925069
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||||||| | || |||||||| ||||| |||||||||||||| || ||||||| ||| |||||| ||||||| |||||||||||||    
T  6924954 agtcaggaggttggaggtttgggagtaaggagaataaaagagtttaatttagcattgttggggaagtggtgctggcgggtgttggtagatagggatagtt 6925053  T
Q  245 tgtggtttagggtgtt 260  Q
    | ||||||||||||||    
T  6925054 tatggtttagggtgtt 6925069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 6893199 - 6893315
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||| ||| |||| |||||||| |||||  ||||||| |||||  ||||||||| |||||||||| |||||||||| | ||||||||    
T  6893199 agtcaggaggttggaggattgggggtaaggagaataaaagaaattaatttggcattgctagggaagtggtgttggcggatgttggtggagaaggatagtt 6893298  T
Q  245 tgtggtttagggtgttg 261  Q
    |||||||||||||||||    
T  6893299 tgtggtttagggtgttg 6893315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 42807382 - 42807266
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||||||||||| || |||| |||||| | ||||| ||||||||||| ||||| ||||| | |||||||||| ||||||| |||||||||||||    
T  42807382 agtcaggaggttggaggtctgggggtaaggagattaaaagaatttaatttagcgttattggggaaatggtgttggcggatgttggtagatagggatagtt 42807283  T
Q  245 tgtggtttagggtgttg 261  Q
    | |||||||||||||||    
T  42807282 tatggtttagggtgttg 42807266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 29543479 - 29543363
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||||||||||| || |||| |||||| | ||||| ||||||||||| ||||| | ||| | |||||||||| |||||||||||| ||||||||    
T  29543479 agtcaggaggttggaggtctgggggtaaggagattaaaagaatttaatttagcgttattggagaaatggtgttggcgggtgttggtggataaggatagtt 29543380  T
Q  245 tgtggtttagggtgttg 261  Q
    | ||| ||| |||||||    
T  29543379 tatggcttaaggtgttg 29543363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 268
Target Start/End: Original strand, 23046217 - 23046333
Alignment:
Q  152 aggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtggtt 251  Q
    |||||||||||||| |||| || |||||||| || |||||| | || ||| ||||||||| ||| | |  |||||||||||||| ||| ||||| |||||    
T  23046217 aggttggaggtttgggggtaagtagaattaaggactttaatattgccttactagggaagtggtgctagatgttgttggtggataaggagagtttatggtt 23046316  T
Q  252 tagggtgttgtcggtga 268  Q
    |||||||||||| ||||    
T  23046317 tagggtgttgtcagtga 23046333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 38456838 - 38456735
Alignment:
Q  172 aggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtcggtgaggt 271  Q
    ||||||||||  || |||||| | || |||||||| |||| | ||||| |||  ||||||||||||||||||||||||| |||||||||||||| | |||    
T  38456838 aggagaattagggagtttaatattgctttattaggcaagtggggttggaggtgtttggtggatagggatagtttgtggtatagggtgttgtcggcgcggt 38456739  T
Q  272 atgg 275  Q
    ||||    
T  38456738 atgg 38456735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 35502943 - 35503068
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| ||| || |||| ||||||||||  || ||||||   || || || ||||||| |||||||||||||||| |||| | ||| ||||||||    
T  35502943 aggaggttggcggtctgggggtaaggagaattagggagtttaatagtgctttgtttgggaagtggtgttggcggttgttgatggagaaggagagtttgtg 35503042  T
Q  249 gtttagggtgttgtcggtgaggtatg 274  Q
    ||||||||||||| |||  |||||||    
T  35503043 gtttagggtgttggcggctaggtatg 35503068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 45968064 - 45967947
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||  ||||| || | ||||||||||  || |||||  | || |||||| |||||| ||||||| |||||  ||||||||||||||| |    
T  45968064 agtcaggaggttggtagtttggggataaggagaattagggagtttaacattgctttattaaggaagtggtgttggaggttgccggtggatagggataggt 45967965  T
Q  245 tgtggtttagggtgttgt 262  Q
    |||||| ||| |||||||    
T  45967964 tgtggtatagagtgttgt 45967947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 18649986 - 18650036
Alignment:
Q  213 gtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtc 263  Q
    ||||||||||||||||||||| | ||| ||||| |||||||||||||||||    
T  18649986 gtgttggcggttgttggtggagaaggagagtttatggtttagggtgttgtc 18650036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 18689406 - 18689456
Alignment:
Q  213 gtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtc 263  Q
    ||||||||||||||||||||| | ||| ||||| |||||||||||||||||    
T  18689406 gtgttggcggttgttggtggagaaggagagtttatggtttagggtgttgtc 18689456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 22533022 - 22533092
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttgg 219  Q
    |||||||||||||| || |||| |||||| | ||||| ||||||||||| ||||| ||||| | |||||||    
T  22533022 aggaggttggaggtctgggggtaaggagattaaaagaatttaatttagcgttattggggaaatggtgttgg 22533092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 22533087 - 22533124
Alignment:
Q  224 tgttggtggatagggatagtttgtggtttagggtgttg 261  Q
    |||||||||||||||||||||| || ||||||||||||    
T  22533087 tgttggtggatagggatagtttatgatttagggtgttg 22533124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 6893470 - 6893510
Alignment:
Q  416 cggatgtttgggtgggtgaagtgtcgttacgggatagattt 456  Q
    ||||||||||||||||||| ||||||||| ||| |||||||    
T  6893470 cggatgtttgggtgggtgaggtgtcgttaagggctagattt 6893510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 445
Target Start/End: Complemental strand, 38456597 - 38456565
Alignment:
Q  413 ggacggatgtttgggtgggtgaagtgtcgttac 445  Q
    ||||||||||||||||||||| |||||||||||    
T  38456597 ggacggatgtttgggtgggtggagtgtcgttac 38456565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 5668458 - 5668342
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||| ||| |||| |||||||| |||||  ||||||| |||||  ||||||||| |||||||||| |||||||||| | ||||||||    
T  5668458 agtcaggaggttggaggattgggggtaaggagaataaaagaaattaatttggcattgctagggaagtggtgttggcggatgttggtggagaaggatagtt 5668359  T
Q  245 tgtggtttagggtgttg 261  Q
    |||||||||||||||||    
T  5668358 tgtggtttagggtgttg 5668342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 18016825 - 18016709
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||| ||  |||| |||||||||||||| ||||||||| | ||||||||||||| |||||||||| |||||||||| | ||| ||||    
T  18016825 agtcaggaggttggaggatttggggtaaggagaattaaagaatttaatttaacgttattagggaagtggtgttggcgggtgttggtggagaaggaaagtt 18016726  T
Q  245 tgtggtttagggtgttg 261  Q
    |||||| ||||||||||    
T  18016725 tgtggtatagggtgttg 18016709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 32534134 - 32534027
Alignment:
Q  144 aagtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagt 243  Q
    |||||||||||||||||||||| |||| |||||||| ||||| ||||||||||| |||||||||||||          | ||||||||||||||||||||    
T  32534134 aagtcaggaggttggaggtttgggggtaaggagaataaaagaatttaatttagcgttattagggaagt----------ggtgttggtggatagggatagt 32534045  T
Q  244 ttgtggtttagggtgttg 261  Q
    ||||||||||||||||||    
T  32534044 ttgtggtttagggtgttg 32534027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 144 - 281
Target Start/End: Complemental strand, 2540668 - 2540531
Alignment:
Q  144 aagtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagt 243  Q
    |||| |||||||||| |||||| || | |||||||||| ||| ||||||   ||  ||||||| |||| ||||||| |||||||| | |||| |||||||    
T  2540668 aagtaaggaggttggtggtttggggataaggagaattagagaatttaataatgctctattaggaaagtggtgttggaggttgttgatagataaggatagt 2540569  T
Q  244 ttgtggtttagggtgttgtcggtgaggtatggtatgga 281  Q
    |||||||||||||||||||||||   ||||||||||||    
T  2540568 ttgtggtttagggtgttgtcggtccagtatggtatgga 2540531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 10304249 - 10304142
Alignment:
Q  151 gaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtggt 250  Q
    |||||||| |||||| |||| |||||||||| ||| |||||||   | ||||| ||||||| |||||||| |||||||||||||| ||| ||||||||||    
T  10304249 gaggttggtggtttgggggtaaggagaattagagagtttaattgcactttattggggaagtggtgttggcagttgttggtggataaggagagtttgtggt 10304150  T
Q  251 ttagggtg 258  Q
     |||||||    
T  10304149 atagggtg 10304142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 476
Target Start/End: Complemental strand, 18016557 - 18016494
Alignment:
Q  413 ggacggatgtttgggtgggtgaagtgtcgttacgggatagatttaccaggttgtacgagttgtc 476  Q
    |||| ||||||||||| || || |||||||||||||||||||||| ||||||||| ||||||||    
T  18016557 ggactgatgtttgggtaggcgaggtgtcgttacgggatagatttaacaggttgtatgagttgtc 18016494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 12687197 - 12687323
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| ||||| ||||  || || |||||||| || |||||||||| |||||||||| ||||||  || | |||||  || ||    
T  12687197 aggaggttggtggtttgggggtaaggagtattagggaattcaatttagctttgttagggaagtggtgttggcggatgttggatgagaaggatacattatg 12687296  T
Q  249 gtttagggtgttgtcggtgaggtatgg 275  Q
    |||||||||| ||||||  ||||||||    
T  12687297 gtttagggtgctgtcggctaggtatgg 12687323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 34600975 - 34600861
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||| | |||||| |||| ||||||||||  || ||||||   || || ||| |||||| |||||||||| |||||||||| ||||| ||| ||||    
T  34600975 aggaggttagtggtttgggggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtggagagggagagtatgtg 34600876  T
Q  249 gtttagggtgttgtc 263  Q
    |||||||||| ||||    
T  34600875 gtttagggtgctgtc 34600861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 263
Target Start/End: Complemental strand, 34627520 - 34627406
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||| | |||||| |||| ||||||||||  || ||||||   || || ||| |||||| |||||||||| |||||||||| ||||| ||| ||||    
T  34627520 aggaggttagtggtttgggggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtggagagggagagtatgtg 34627421  T
Q  249 gtttagggtgttgtc 263  Q
    |||||||||| ||||    
T  34627420 gtttagggtgctgtc 34627406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 9906228 - 9906301
Alignment:
Q  208 aagtagtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtcggtgaggtatggtatgga 281  Q
    |||| |||| ||||||||||| |||| ||||| ||||| ||||||| ||||||||| |  ||||||||||||||    
T  9906228 aagtggtgtaggcggttgttgatggagagggagagtttatggtttaaggtgttgtcagctaggtatggtatgga 9906301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 34722241 - 34722145
Alignment:
Q  160 ggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttaggg 256  Q
    |||||| |||| ||||||||||  || ||||||   || || ||| |||||| |||||||||| |||||||||| ||||| ||| ||||||||||||    
T  34722241 ggtttgggggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtggagagggagagtatgtggtttaggg 34722145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 32533872 - 32533813
Alignment:
Q  416 cggatgtttgggtgggtgaagtgtcgttacgggatagatttaccaggttgtacgagttgt 475  Q
    |||||||||||||||| ||  |||||||||| ||||||||||  |||||||| |||||||    
T  32533872 cggatgtttgggtgggagagttgtcgttacgtgatagatttagtaggttgtatgagttgt 32533813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 145 - 266
Target Start/End: Original strand, 22935613 - 22935734
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||||||| |||||| |||| ||||||||||  |||||||||  | | ||||||||||| | |||||||  ||||||| |||| ||||||||||    
T  22935613 agtcaggaggttggcggtttgggggtaaggagaattagggattttaatacaactttattagggaattggtgttggaagttgttgatggagagggatagtt 22935712  T
Q  245 tgtggtttagggtgttgtcggt 266  Q
    ||||||||||||||||||||||    
T  22935713 tgtggtttagggtgttgtcggt 22935734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 145 - 260
Target Start/End: Complemental strand, 7962227 - 7962122
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||          | ||||||||||||||||||||     
T  7962227 agtcaggaagttggaggtttgggggttaggagaattaaagaatttaatttagcattattagggaagt----------ggtgttggtggatagggatagtc 7962138  T
Q  245 tgtggtttagggtgtt 260  Q
    ||||||||||||||||    
T  7962137 tgtggtttagggtgtt 7962122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 260
Target Start/End: Complemental strand, 32019077 - 32018962
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||||||| || ||| |||| |||||||| ||||| ||||||||||| ||||||||||||| ||||||| || |||||  ||| || |||||||    
T  32019077 agtcaggaggttggtggcttgggggtaaggagaataaaagaatttaatttagctttattagggaagtggtgttggagggtgttgacggagagagatagtt 32018978  T
Q  245 tgtggtttagggtgtt 260  Q
    ||||||||||||||||    
T  32018977 tgtggtttagggtgtt 32018962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 30723600 - 30723488
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| ||||||||||  || ||||||||||| || |||||||| | ||||||| ||||||||| |||||  |  | ||||||    
T  30723600 aggaggttggtggtttgggggtaaggagaattagggagtttaatttagcgttgttagggaaatggtgttggaggttgttggaggataatgtcaatttgtg 30723501  T
Q  249 gtttagggtgttg 261  Q
    |||||||||||||    
T  30723500 gtttagggtgttg 30723488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 25325139 - 25325211
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcg 221  Q
    |||||||||| || ||| |||| ||||||||||  || ||||||||||| ||||||||||||| |||||||||    
T  25325139 aggaggttggtggattgggggtaaggagaattagggaatttaatttagctttattagggaagtggtgttggcg 25325211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 2654812 - 2654692
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||| ||||| |||| ||||||||||||||| |||||||||||||||  |  ||||||||| ||||||| | || || | |||||| |||||||    
T  2654812 agtcaggaggctggagttttgggggttaggagaattagagattttaatttagctcttctagggaagtggtgttggagattattaggggatagagatagtt 2654713  T
Q  245 tgtggtttagggtgttgtcgg 265  Q
    |||||||||||||||||||||    
T  2654712 tgtggtttagggtgttgtcgg 2654692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 5677843 - 5677727
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||| ||| | || |||||||| ||| | || ||||||||||| ||| |||||| |||||||||| | |||||||| | ||||||||    
T  5677843 agtcaggaggttggaggattgggagtaaggagaataaaataattcaatttagcattgttaaggaagtggtgttggcgggtattggtggagaaggatagtt 5677744  T
Q  245 tgtggtttagggtgttg 261  Q
    |||||||||||||||||    
T  5677743 tgtggtttagggtgttg 5677727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 31068733 - 31068808
Alignment:
Q  187 tttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgt 262  Q
    |||||||| || ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  31068733 tttaattttgctttattagggaagtggtgttggcggttgttggtggatagggagagtttatggtttagggtgttgt 31068808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 12687210 - 12687276
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagt 211  Q
    ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  12687210 agtcaggaggttggaggattgggggtaaggagaattaaagattttaatttagcattattagggaagt 12687276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 264
Target Start/End: Original strand, 42475323 - 42475442
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||||||| |||||| |||| ||||||||||  || |||||| ||||  | |||||||||| ||||||| | ||||||||||| || ||||| |    
T  42475323 agtcaggaggttggcggtttgggggtaaggagaattagggactttaatatagctcttttagggaagtggtgttggagattgttggtggagagagataggt 42475422  T
Q  245 tgtggtttagggtgttgtcg 264  Q
    | ||||||||||||||||||    
T  42475423 tatggtttagggtgttgtcg 42475442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 23451136 - 23451255
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||| |||| || |||||||||||||||  ||||||||||| ||  |||||||||||| ||| ||| ||||||| || ||||  |||||||    
T  23451136 agtcaggaggttg-aggtctgggggttaggagaattagggattttaattttgctgtattagggaagtggtgctggaggttgttagttgatacagatagtt 23451234  T
Q  245 tgtggtttagggtgttgtcgg 265  Q
    | |||||||| ||||||||||    
T  23451235 tatggtttagtgtgttgtcgg 23451255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 263
Target Start/End: Original strand, 52249289 - 52249404
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||| ||| |||| |||||||||| ||||||||||||||||   ||| | |||| ||||||| | |||||| ||||||  ||| |||    
T  52249289 agtcaggaggttggaggattgggggtaaggagaattagagattttaatttagca--ctta-gtaagtggtgttggagattgttgttggataaagattgtt 52249385  T
Q  245 tgtggtttagggtgttgtc 263  Q
    |||||||||||||||||||    
T  52249386 tgtggtttagggtgttgtc 52249404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 25529118 - 25529231
Alignment:
Q  150 ggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtgg 249  Q
    ||||||||| |||||| |||| | |||||||| ||| |||||| | || ||||| ||||| | ||||||| |||||||  |||||||||| ||||| |||    
T  25529118 ggaggttggtggtttgggggtgatgagaattagagagtttaatgttgctttattggggaactggtgttggaggttgtttctggatagggagagtttatgg 25529217  T
Q  250 tttagggtgttgtc 263  Q
    ||||||||||||||    
T  25529218 tttagggtgttgtc 25529231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 22584214 - 22584162
Alignment:
Q  213 gtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtcgg 265  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  22584214 gtgttggaggttgttggtggatagggagagtttgtggtttagggtgttgtcgg 22584162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 281
Target Start/End: Complemental strand, 27364844 - 27364712
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||  |||| ||||||||||  || |||||||||||||| | |||||| | | ||||| ||||||||| |||||  |  ||| ||||    
T  27364844 aggaggttggtggtttaggggtaaggagaattagggagtttaatttagcattgtcagggaaatggggttggaggttgttggaggataatgccagtatgtg 27364745  T
Q  249 gtttagggtgttgtcggtgaggtatggtatgga 281  Q
    |||||||||| || ||| ||| |||||||||||    
T  27364744 gtttagggtgctggcggcgagttatggtatgga 27364712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 36099649 - 36099537
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| | || ||||||||||  || ||| ||||||| || |||||   || |||||||||||||||||| |||||   |||||||||    
T  36099649 aggaggttggtggtttgggcgtaaggagaattagggagtttgatttagcgttgttaggtgggtggtgttggcggttgttggtagatagtagtagtttgtg 36099550  T
Q  249 gtttagggtgttg 261  Q
    |||||||||||||    
T  36099549 gtttagggtgttg 36099537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 51799563 - 51799670
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| |||||  |||  || ||||||   || ||||| ||||||| |||||||||||||||||| |||||||| | ||| ||    
T  51799563 aggaggttggtggtttgggggtaaggagttttagggagtttaatagtgccttattggggaagtggtgttggcggttgttggttgatagggagaatttatg 51799662  T
Q  249 gtttaggg 256  Q
    ||||||||    
T  51799663 gtttaggg 51799670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 476
Target Start/End: Original strand, 12687462 - 12687525
Alignment:
Q  413 ggacggatgtttgggtgggtgaagtgtcgttacgggatagatttaccaggttgtacgagttgtc 476  Q
    |||| ||||||||||| || || ||||||||||||| ||||||||  |||||||| ||||||||    
T  12687462 ggactgatgtttgggtaggcgaggtgtcgttacgggttagatttattaggttgtatgagttgtc 12687525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 5677570 - 5677512
Alignment:
Q  418 gatgtttgggtgggtgaagtgtcgttacgggatagatttaccaggttgtacgagttgtc 476  Q
    ||||||||||||||||| ||||||||| ||| ||||||||  |||||||  ||||||||    
T  5677570 gatgtttgggtgggtgaggtgtcgttaagggttagatttaataggttgtttgagttgtc 5677512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 32352779 - 32352849
Alignment:
Q  187 tttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggt 257  Q
    ||||||||||| || ||||| || | |||||||||| ||||||||||||| | | ||||||||| ||||||    
T  32352779 tttaatttagctttgttaggaaaatggtgttggcggatgttggtggatagaggtggtttgtggtatagggt 32352849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 14976163 - 14976212
Alignment:
Q  186 ttttaatttagcattattagggaagtagtgttggcggttgttggtggata 235  Q
    |||||||||| |||||||||| |||| ||||||| || ||||||||||||    
T  14976163 ttttaatttatcattattaggaaagtggtgttggaggatgttggtggata 14976212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 29644446 - 29644335
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| |||| ||||||||||  || ||||||   ||||||||| | | || ||||||||||||||||   || | ||| ||||||||    
T  29644446 aggaggttggtggtttg-gggtgaggagaattagggagtttaatagtgcattattaagaatgtggtgttggcggttgttgactgaaaaggagagtttgtg 29644348  T
Q  249 gtttagggtgttg 261  Q
    || ||||||||||    
T  29644347 gtatagggtgttg 29644335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 40430091 - 40430002
Alignment:
Q  181 aaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtcggtgagg 270  Q
    ||||| ||| ||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  40430091 aaagaatttcatttagcgttattagggaagtggtgttggcgggtgttgatggatagggatagtttgtggtttagggtgttggcggcgagg 40430002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 145 - 261
Target Start/End: Complemental strand, 1998786 - 1998670
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    ||||||||||||||||||||| |||| |||||||| | ||| ||||||||||| ||| ||||||||| ||| ||| || ||||||   ||||||||||||    
T  1998786 agtcaggaggttggaggtttgggggtaaggagaataagagaatttaatttagcgttactagggaagtggtgctggagggtgttggcatatagggatagtt 1998687  T
Q  245 tgtggtttagggtgttg 261  Q
    | |||||||||||||||    
T  1998686 tatggtttagggtgttg 1998670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 145 - 260
Target Start/End: Original strand, 24738823 - 24738938
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||||||||||| |||||| |||| |||||||| ||||| ||||||||||| ||| ||||||||| ||||||| || | |||  ||| || |||||||    
T  24738823 agtcaggaggttggtggtttgggggtaaggagaataaaagaatttaatttagctttactagggaagtggtgttggagggtattgacggagagagatagtt 24738922  T
Q  245 tgtggtttagggtgtt 260  Q
    ||||||||||||||||    
T  24738923 tgtggtttagggtgtt 24738938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 21579741 - 21579621
Alignment:
Q  145 agtcaggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtt 244  Q
    |||||| ||||||| |||||| |||| ||||||||||  || ||||||   || ||||||||||||| ||||||| ||||| |||||||||||||||  |    
T  21579741 agtcagaaggttggtggtttgagggtaaggagaattagggagtttaatagtgctttattagggaagtggtgttggaggttgctggtggatagggataact 21579642  T
Q  245 tgtggtttagggtgttgtcgg 265  Q
    |||||| | ||||||||||||    
T  21579641 tgtggtatcgggtgttgtcgg 21579621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 12605894 - 12605988
Alignment:
Q  172 aggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtcggt 266  Q
    |||||||||| |||||||||| | || ||||||||||||| ||||||| |||||||| | ||||| |||||||| |||| ||  |||||||||||    
T  12605894 aggagaattagagattttaatgttgctttattagggaagtggtgttggaggttgttgatagatagagatagtttatggtatactgtgttgtcggt 12605988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 30504795 - 30504858
Alignment:
Q  202 ttagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtcgg 265  Q
    |||||||||||||||||||  ||||||| ||||||||| ||||| ||| |||||||||||||||    
T  30504795 ttagggaagtagtgttggcatttgttggaggatagggagagtttatggattagggtgttgtcgg 30504858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 45717861 - 45717775
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggata 235  Q
    ||||||||||||| ||| |||| ||||| ||   || |||||||||| |||||||||| |||| ||||||| || ||||||||||||    
T  45717861 aggaggttggagggttgggggtgaggaggatgggagcttttaatttatcattattaggaaagtggtgttggaggatgttggtggata 45717775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 20947117 - 20947250
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtg-ttggcggttgttggtggatagggatagtttgt 247  Q
    |||||||||| |||||| |||| ||||||||||  || |||||| |||| || |||||||| | | | |||| ||||||||| |||||  |  ||| |||    
T  20947117 aggaggttggtggtttgggggtaaggagaattagggagtttaatatagcgttgttagggaaatgggggttggaggttgttggaggataatgccagtatgt 20947216  T
Q  248 ggtttagggtgttgtcggtgaggtatggtatgga 281  Q
    ||||||||||| || ||| ||| |||||||||||    
T  20947217 ggtttagggtgctggcggcgagctatggtatgga 20947250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 12807582 - 12807669
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatag 236  Q
    |||||||||| |||||  |||||| ||||||||  || ||||||||| |  | |||||||||| ||||||| | ||||||||||||||    
T  12807582 aggaggttggtggtttaggggttatgagaattagggagtttaatttatctctgttagggaagtggtgttggagattgttggtggatag 12807669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 14440389 - 14440322
Alignment:
Q  213 gtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtcggtgaggtatggtatgg 280  Q
    ||||||||| ||||| || ||||||| | ||||||||| ||||||||||| ||  |||||||||||||    
T  14440389 gtgttggcgtttgttagttgataggggtggtttgtggtgtagggtgttgttggctaggtatggtatgg 14440322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 26245983 - 26246068
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggata 235  Q
    ||||||||||||| ||| |||| ||||| ||   || |||||||||| |||||||||| |||| ||||||| || ||||||||||||    
T  26245983 aggaggttggagggttg-gggtgaggaggatgggagcttttaatttatcattattaggaaagtggtgttggaggatgttggtggata 26246068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 39116472 - 39116550
Alignment:
Q  187 tttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggtgttgtcgg 265  Q
    ||||||||||| || ||||| |||| |||||||||| ||||||  || | ||||| ||| |||||||||||| ||||||    
T  39116472 tttaatttagctttgttaggaaagtggtgttggcggatgttggatgagaaggatactttatggtttagggtgctgtcgg 39116550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 15139534 - 15139582
Alignment:
Q  187 tttaatttagcattattagggaagtagtgttggcggttgttggtggata 235  Q
    ||||||||  ||||||||||||||| ||||||| ||||| |||||||||    
T  15139534 tttaatttgtcattattagggaagtggtgttggaggttgatggtggata 15139582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 26146860 - 26146812
Alignment:
Q  213 gtgttggcggttgttggtggatagggatagtttgtggtttagggtgttg 261  Q
    ||||||||| ||||||||||| |||  ||||||||||| ||||||||||    
T  26146860 gtgttggcgtttgttggtggagaggagtagtttgtggtatagggtgttg 26146812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 264
Target Start/End: Original strand, 10979 - 11094
Alignment:
Q  149 aggaggttggaggtttgtgggttaggagaattaaagattttaatttagcattattagggaagtagtgttggcggttgttggtggatagggatagtttgtg 248  Q
    |||||||||| |||||| | |||||||||||||  |  || ||| | || ||||||||||||| ||||||||||||||||||||||||||| ||||| |     
T  10979 aggaggttggtggtttgggtgttaggagaattagggtgttcaatattgctttattagggaagtggtgttggcggttgttggtggatagggagagtttata 11078  T
Q  249 gtttagggtgttgtcg 264  Q
     ||||||||| |||||    
T  11079 ctttagggtgatgtcg 11094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 32836 - 32788
Alignment:
Q  187 tttaatttagcattattagggaagtagtgttggcggttgttggtggata 235  Q
    ||||||||||| ||||||||||||| ||||||| |||||||||| ||||    
T  32836 tttaatttagctttattagggaagtggtgttggaggttgttggttgata 32788  T

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Target: scaffold0131 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 4040 - 4095
Alignment:
Q  202 ttagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggt 257  Q
    |||||||| | |||||||||| ||||||||||||| ||| ||||||||| ||||||    
T  4040 ttagggaaatggtgttggcggatgttggtggatagagatggtttgtggtatagggt 4095  T

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Target: scaffold0029 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 134338 - 134393
Alignment:
Q  202 ttagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggt 257  Q
    |||||||| | |||||||||| ||||||||||||| ||| ||||||||| ||||||    
T  134338 ttagggaaatggtgttggcggatgttggtggatagagatggtttgtggtatagggt 134393  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 312165 - 312220
Alignment:
Q  202 ttagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggt 257  Q
    |||||||| | |||||||||| ||||||||||||| ||| ||||||||| ||||||    
T  312165 ttagggaaatggtgttggcggatgttggtggatagagatggtttgtggtatagggt 312220  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 327619 - 327674
Alignment:
Q  202 ttagggaagtagtgttggcggttgttggtggatagggatagtttgtggtttagggt 257  Q
    |||||||| | |||||||||| ||||||||||||| ||| ||||||||| ||||||    
T  327619 ttagggaaatggtgttggcggatgttggtggatagagatggtttgtggtatagggt 327674  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 28419 - 28371
Alignment:
Q  213 gtgttggcggttgttggtggatagggatagtttgtggtttagggtgttg 261  Q
    ||||||||| ||||||||||| |||  ||||||||||| ||||||||||    
T  28419 gtgttggcgtttgttggtggagaggagtagtttgtggtatagggtgttg 28371  T

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