View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_high_22 (Length: 457)
Name: NF21197_high_22
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Original strand, 4866186 - 4866612
Alignment:
| Q |
16 |
agtttatcgcaagcctcatttttaatcttgttgaaaacttcagatagcgattctttcatgttcttgtagaagacatgtgattgtaaaataaatacttcaa |
115 |
Q |
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| T |
4866186 |
agtttatagcaagcctcatttttaatcttgttgaagacttcagatagcgattctttcatgttcttgtagaagacatgtgattgtaaaataaatacttcaa |
4866285 |
T |
|
| Q |
116 |
agaaatagtaggtaagacgaggaatttgttacata--gtgtatgagggaacgaacacagctcaaataccattgtaattaagaataattatattatgagaa |
213 |
Q |
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| T |
4866286 |
agaaatagttggtaagacgaggaatttgttacatatagtgtatgagggaacgaacacaactcaaataccattgtaattaagaataattatattatgagaa |
4866385 |
T |
|
| Q |
214 |
ctagtagtggaacgtattaagccctcaatattaaggacatcacatcttaaaaacttaaatatacaattgtatccgtacttatacttatacttatacttat |
313 |
Q |
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| T |
4866386 |
ctagtagtggaacgtattaagccctcaatattaaggatatcacatcttaaaaacttaaatatacaattgtatccatacttatact--------------t |
4866471 |
T |
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| Q |
314 |
atctatttgtagttgcatgaagatgtttcttgaactattgtattttttgcagatgcacaatctataagagtatttttagacgttgggatttagtacttta |
413 |
Q |
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| T |
4866472 |
atctatttgtagttgcatgtagatgtttcttgaactattgtattttttgcacatgcacaatctataagagtatttttagacgttgggctttagtacttta |
4866571 |
T |
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| Q |
414 |
atgtcttggttcatgaaccaaaagatctaaatgtatttcat |
454 |
Q |
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| T |
4866572 |
atgtcttggttcatgaaccaaaagatctaaatctatttcat |
4866612 |
T |
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