View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_high_23 (Length: 430)
Name: NF21197_high_23
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 8686880 - 8687285
Alignment:
| Q |
11 |
cacagagtgaggggaatgttgttggatgtactacctcatgcaaaatacacgaaggtggtgaagactaaatattttccctgcactcgttgaagactttata |
110 |
Q |
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| T |
8686880 |
cacagagtgaggggaatgttgttggatgtgctacctcttgcaaaatacacgaaggtagtgaagactaaatattttccctgcactcgttgaagactttata |
8686979 |
T |
|
| Q |
111 |
ttctaatatatagaaaagaagattttatgtagcaatatacaataatcgatcgagatgtggctagctagaagtcctcagattatttaaccttaaccaacgc |
210 |
Q |
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| T |
8686980 |
ttctaatatatagaaaagaagattttatgtagcaatatacaataatcgatcgagatgtggctagctagaagtcctcagattatttaaccttaaccaacgc |
8687079 |
T |
|
| Q |
211 |
atgaaaatactcaataataaaattaaaccagcataagta--tttattaacataaataataatgaagttaatcatatattcatacacatcaatatacccta |
308 |
Q |
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| T |
8687080 |
atgaaaatactcaataataaaattaaaccagcataagtatttttattaacataaataataatgaagttaatcatatattcatacacatcaatatacccta |
8687179 |
T |
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| Q |
309 |
gctaaataactatgtaaaaccacccaaagagaaaacatgtgtatatacatggacaaacaaggggtgataaaataaggtatgatttaaagtttttcatggc |
408 |
Q |
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| T |
8687180 |
gctaaataactatgtaaaaccacccaaagaaaaaacatgtgtatatacatggacaaacaaggggtgataaaataaggtatgatttcaagtttttcatggc |
8687279 |
T |
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| Q |
409 |
ttcttg |
414 |
Q |
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| T |
8687280 |
ttcttg |
8687285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 182 - 414
Target Start/End: Complemental strand, 8675423 - 8675184
Alignment:
| Q |
182 |
tcctcagattatttaaccttaaccaacgcatgaaaatactcaataata--aaattaaaccagcataagtatttattaacataaataataatgaagttaat |
279 |
Q |
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| T |
8675423 |
tcctcagaatatttaaccttaaccaacgcacgaaaatactcgataatataaaactaaaccaacataaatatttattaacataaataataatgaagttaat |
8675324 |
T |
|
| Q |
280 |
catatattcatacacatcaata-taccctagctaaataactatgtaaaaccacccaaagagaaaacatgtgt---atatacatggacaaacaaggggtga |
375 |
Q |
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| T |
8675323 |
catacattcatatacatcaatattaaactagataaagaactatgtaaaaccacccgaagaaaaaacatgtatatcatatacatggacaaacaaggggtga |
8675224 |
T |
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| Q |
376 |
taaaataaggtatgattt-aaagtttttcatggcttcttg |
414 |
Q |
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| T |
8675223 |
taaaataagttatgatttaaaagtttttcatggcttcttg |
8675184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 186 - 413
Target Start/End: Complemental strand, 8693638 - 8693416
Alignment:
| Q |
186 |
cagattatttaaccttaaccaacgcatgaaaatactcaataataaaattaaaccagcataagtatttattaacataaataataatgaagttaatcatata |
285 |
Q |
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| T |
8693638 |
cagattatataaccattaccaaggaatgaaagtactca-taacaaaattaaactagcataagtatt-attaaattaaattatagttaagtaaatcataca |
8693541 |
T |
|
| Q |
286 |
ttcatacacatcaatataccctagctaaataactatgtaaaaccacccaaagagaaaacatgtgt-atatacatggacaaacaaggggtgataaaataag |
384 |
Q |
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| T |
8693540 |
ttcaaatacatcaatat----tagataaataacgatgtaaaaccacccaaagaaaaaacatgtatcatatacatgaacaaacaaggggtgacaaaataag |
8693445 |
T |
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| Q |
385 |
gtatgatttaaagtttttcatggcttctt |
413 |
Q |
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| T |
8693444 |
gtatgatttaaagtttttcatggcttctt |
8693416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 8695753 - 8695854
Alignment:
| Q |
311 |
taaataactatgtaaaaccacccaaagagaaaac-atgtgt-atatacatggacaaacaaggggtgataaaataaggtatgatttaaagtttttcatggc |
408 |
Q |
| |
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|||||||| || ||||||||||||||| ||||| |||| | |||||||||||||||||| |||||| || || |||||| |||||| |||||||||| |
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| T |
8695753 |
taaataacgttgcaaaaccacccaaagaaaaaaccatgtatcatatacatggacaaacaaagggtgacaa---aaagtatga-ttaaagattttcatggc |
8695848 |
T |
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| Q |
409 |
ttcttg |
414 |
Q |
| |
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|||||| |
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| T |
8695849 |
ttcttg |
8695854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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