View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_high_30 (Length: 366)
Name: NF21197_high_30
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 39865664 - 39865331
Alignment:
| Q |
16 |
gatagatatcaaacagaattaaggacaaaataaaaacannnnnnnactagcttatcgatttgacatcaatagtcatttgattcactcttccaagtttaaa |
115 |
Q |
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| T |
39865664 |
gatagatatcaaacagaattaaggacaaaataaaaacatttatttactagcttattgatttgacatcaatagtcatttgatttactcttccaagtttaaa |
39865565 |
T |
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| Q |
116 |
aaagatatcattaaaatagaatttttggtgggatggccttagatgaattcaaattttgatgatgccttgatatatcaatatgtgtaagatcagtgaactg |
215 |
Q |
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| T |
39865564 |
aaagatattattaaaatagaatttttggtgggatggccttagatgaattcaaattttgatgatgccttgatatatcaatatgtgtaagatcagtgaactg |
39865465 |
T |
|
| Q |
216 |
atttctgcaattattgtgcagatattcatctaacaatatttgactttgaattagataattcaattgccggttactgatgcagttattgtatagattttca |
315 |
Q |
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| T |
39865464 |
atttctgcaattattgtgcagatattcatctaacagaatttgtctttgaattagataattcaattgccggttactgatgcagttattgtatagattttca |
39865365 |
T |
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| Q |
316 |
gtaagcgatattcgaatttgaattgagaatatct |
349 |
Q |
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| T |
39865364 |
gttagcgatatttgaatttgaattgagaatatct |
39865331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 176 - 349
Target Start/End: Complemental strand, 36342197 - 36342017
Alignment:
| Q |
176 |
gatgccttgatatatcaatatgtgtaagatcagtgaactgatttctgcaattattgtgcagatattcatctaacaatatttgactttgaattagataatt |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
36342197 |
gatgccttgatatatcaatatgtgtaagatcagtgaactgattgctgcaattattgtgcagatattcatctaacaatatttaactttgaattagagaatt |
36342098 |
T |
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| Q |
276 |
caattgc----cgg---ttactgatgcagttattgtatagattttcagtaagcgatattcgaatttgaattgagaatatct |
349 |
Q |
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||||||| | | | |||||||||||| || |||||||||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
36342097 |
caattgctcatcagtcatcactgatgcagtttttctatagattttcagttagcaatatttgaatttgaattgagaatatct |
36342017 |
T |
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