View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_high_35 (Length: 357)
Name: NF21197_high_35
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 348
Target Start/End: Original strand, 35819497 - 35819831
Alignment:
| Q |
14 |
cacagaccacaaaagaaccactcaacctcgtaaaacccgaatgatcatgatgtggtgttggagcaaccctgtggtgaccacttggtaccagagcaatccc |
113 |
Q |
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| T |
35819497 |
cacagaccacaaaagaaccactcaacctcgtaaaacccgaatgatcatgatgtggcgctggagcaaccatgtggtgaccacttgataccagagcaatccc |
35819596 |
T |
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| Q |
114 |
gtcgtgcacacttgatgtcggagcatttgctggtactggagataacgatggtccatgatgttcttggtgggacaaaaccacaaggctcaacttttcaccc |
213 |
Q |
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| T |
35819597 |
gtcgtgcacacctgatgttggagcatttgctggtactggagataacgatggtccatgatgttcttggtgggacaaaaccacaaggctcaacttttcaccc |
35819696 |
T |
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| Q |
214 |
tttacgcaatgtttaacatttccactgatgaagtaaaagtgtcctggtttgtccaacaaaaatgttgaatctccaccatgcatcttacgaattgggtttg |
313 |
Q |
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| T |
35819697 |
tttacgcaatgtttaacatttccactgatgaagtaaaagtgtcccggtttgtccaacaaaaatgttgaatctccaccatgcatcttacgaattgggttcg |
35819796 |
T |
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| Q |
314 |
taacattgcatgaatcataggcttgtttgtttacc |
348 |
Q |
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| T |
35819797 |
taacgttgcatgaatcataggcttgtttgtttacc |
35819831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 269
Target Start/End: Original strand, 38711362 - 38711447
Alignment:
| Q |
184 |
gacaaaaccacaaggctcaacttttcaccctttacgcaatgtttaacatttccactgatgaagtaaaagtgtcctggtttgtccaa |
269 |
Q |
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| T |
38711362 |
gacaaaacaacaagatgcaacttttcgccctttagacaatttgaaacttttccactgatgaagtaaaagggacctgatttgtccaa |
38711447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 344
Target Start/End: Original strand, 38719890 - 38720050
Alignment:
| Q |
184 |
gacaaaaccacaaggctcaacttttcaccctttacgcaatgtttaacatttccactgatgaagtaaaagtgtcctggtttgtccaacaaaaatgttgaat |
283 |
Q |
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|||||||| |||| | ||||||||||||||||| ||||| | ||| |||||||||||||| ||||| | |||| ||||| || ||| ||||||| |
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| T |
38719890 |
gacaaaacaacaacgatcaacttttcacccttttggcaattctcaacgattccactgatgaagaaaaagggacctgacttgtcaaatttaaaggttgaat |
38719989 |
T |
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| Q |
284 |
ctccaccatgcatcttacgaattgggtttgtaacattgcatgaatcataggcttgtttgtt |
344 |
Q |
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| T |
38719990 |
ctccatcgtccaacttaagaattggatttttggtgttgcatgaatcaaagtcttgtttgtt |
38720050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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