View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_high_45 (Length: 290)
Name: NF21197_high_45
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 4985821 - 4985546
Alignment:
| Q |
13 |
gtaatgacttcaaaaatctattatatatattgtaccaacgatcgcggttgcggactgaaatttaaaaccatgaatattgataccgctcatatccttgcca |
112 |
Q |
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| T |
4985821 |
gtaatgacttcaaaaatctattatatatattgtagcaacgatcgcggttgcggactgaaatttaaaacaatgactattgataccgctcatatccttgcca |
4985722 |
T |
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| Q |
113 |
aacccaaacaatttaatttagagaaggctttaagtattggttcaagaatttcccatattctaatatgtctccagcaatttttctcacctcaacaatataa |
212 |
Q |
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| T |
4985721 |
aacccaaacaatttaatttagagaaggctttaagtattggttcaagaatttcccatattctaatatgtctccagcaatttttctcacctcaacaatataa |
4985622 |
T |
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| Q |
213 |
aatgaaaatgtaacttcaaaaatttctatatctatactgagttgttcatctatccttgtctcaattccctccaatc |
288 |
Q |
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| T |
4985621 |
aatgaagatgtaacttcaaaaatttctatatctatactgagttgttcaactatccttgtctcaattccctccaatc |
4985546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 4983346 - 4983160
Alignment:
| Q |
99 |
tcatatccttgccaaacccaaacaatttaatttagagaaggctttaagtattggttcaagaatttcccatattctaatatgtctccagcaatttttctca |
198 |
Q |
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||||||||||| || |||||||||||| | | ||||||||||||||||| |||||| |||||||| |||||| | | | ||||| | |||||| ||| |
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| T |
4983346 |
tcatatccttgagaatcccaaacaatttcactaagagaaggctttaagtactggttccagaatttcgtatattccactgtatctccggaaattttgttca |
4983247 |
T |
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| Q |
199 |
cctcaacaatataaaatgaaaatgtaacttcaaaaatttctatatctatactgagttgttcatctatccttgtctcaattccctcca |
285 |
Q |
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| T |
4983246 |
cctcaacaatataaaatgaagatgcaacttcaaaaatttctgtatcaatggtgagttgttcacttactcctgtctcaaatccctcca |
4983160 |
T |
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