View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21197_high_54 (Length: 262)
Name: NF21197_high_54
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_high_54 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 55737294 - 55737058
Alignment:
| Q |
9 |
agcagagaatacaccaaaagcatacaagaaaaacaatcgctaccggaaaagcaaagaagaaccatgtgttgaaacttattggttttgcaccaggaacaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55737294 |
agcagagaatacaccaaaagcatacaagaaaaacaatcgctaccggaaaagcaaagaagaaccatgtgttgaaacttattggttttgcaccaggaacaag |
55737195 |
T |
|
| Q |
109 |
actcttccacattccaatcaatatcaaatttacacctgtccctgtcaaagtgctcattcctccaattggaaccgcataaaccactgtcagaaccaccgct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55737194 |
actcttccacattccaatcaatatcaaatttacacctgtccctgtcaaagtgctcattcctccaattggaaccgcataaaccactgtcagaaccaccgct |
55737095 |
T |
|
| Q |
209 |
ctgctgaacttattcaccaactccgattgctctgacg |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55737094 |
ctgctgaacttattcaccaactccgattgctctgacg |
55737058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 9378713 - 9378549
Alignment:
| Q |
60 |
caaagaagaaccatgtgttgaaacttattggttttgcaccaggaacaagactcttccacattccaatcaatatcaaatttacacctgtccctgtcaaagt |
159 |
Q |
| |
|
||||||| ||||| | ||||| |||||||||||||| |||| |||| || |||||||||||||| | |||||| || |||||||| ||||| | ||| |
|
|
| T |
9378713 |
caaagaaaaaccaagaattgaagcttattggttttgcttcaggggcaaggcttttccacattccaattattatcaagttcacacctgttcctgttagagt |
9378614 |
T |
|
| Q |
160 |
gctcattcctccaattggaaccgcataaaccactgtcagaaccaccgctctgctgaacttattca |
224 |
Q |
| |
|
||| || ||||||||||| ||||| |||||||| |||| ||| ||||| |||||||| |||| |
|
|
| T |
9378613 |
gcttatccctccaattggtgtagcatacaccactgttagaatcactgctctactgaacttgttca |
9378549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University