View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_high_55 (Length: 251)
Name: NF21197_high_55
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 30834279 - 30834048
Alignment:
| Q |
4 |
aaaaattttgcactgatattgttttctttctaagatctacttacattacacttactattggtttttgtttttcatgctttacatcgaaagatattaacaa |
103 |
Q |
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| T |
30834279 |
aaaaattttgcactgatattgttttctttttaagatctacttacatcacacttactattggtttt-gtttttcatgctttacatcgaaagatattaacaa |
30834181 |
T |
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| Q |
104 |
atggaatatatcgaagtattgaacaccgagcaatagtggactctaaaaaggaaaggctttcaattgctacattccacagcttgaatcaagatggtattgt |
203 |
Q |
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| T |
30834180 |
atggaatatatcgaagtattgaacaccgagcaatagtggacactaaaaaggaaaggctttcaattgctacattccacagcttgaatcaagatggtattgt |
30834081 |
T |
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| Q |
204 |
aggtcctttggagagcttaatcactgaagaaac |
236 |
Q |
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| T |
30834080 |
aggtcctttggagagcttaatcactgaagaaac |
30834048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 30826621 - 30826452
Alignment:
| Q |
66 |
ttttgtttttcatgctttacatcgaaagatattaacaaatggaatatatcgaagtattgaacaccgagcaatagtggactctaaaaaggaaaggctttca |
165 |
Q |
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|||| |||||||||||||| |||||| ||| | |||||||||||||||||||||||||| || ||||||| |||| ||||| ||||||||||||||||| |
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| T |
30826621 |
ttttatttttcatgctttatatcgaa-gattatgacaaatggaatatatcgaagtattgagcatcgagcaacagtgaactctgaaaaggaaaggctttca |
30826523 |
T |
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| Q |
166 |
attgctacattccacagcttgaatcaagatggtattgtaggtcctttggagagcttaatcactgaagaaac |
236 |
Q |
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| T |
30826522 |
attgccattttccatggcctaaaacaagatagtattgtaggtccaatggagagcttgattactgaaaaaac |
30826452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 30839800 - 30839716
Alignment:
| Q |
98 |
taacaaatggaatatatcgaagtattgaacaccgagcaatagtggactctaaaaaggaaaggctttcaattgctacattccacag |
182 |
Q |
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|||| ||||| |||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||||||||| |||| |
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| T |
30839800 |
taaccaatgggatatatcgaagtattgaacatcgagcaatagtgaactcggaaaaggaaagactttcaattgctacattctacag |
30839716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 30837812 - 30837770
Alignment:
| Q |
98 |
taacaaatggaatatatcgaagtattgaacaccgagcaatagt |
140 |
Q |
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| T |
30837812 |
taacaaatggaatatatcaaagtattgagcatcgagcaatagt |
30837770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 21250902 - 21250946
Alignment:
| Q |
92 |
agatattaacaaatggaatatatcgaagtattgaacaccgagcaa |
136 |
Q |
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| T |
21250902 |
agatagtaacaaatggaatataccgaagcattgaacatcgagcaa |
21250946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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