View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_high_56 (Length: 250)
Name: NF21197_high_56
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10166661 - 10166883
Alignment:
| Q |
1 |
ctcctatgctaaccgataagtaccagattttcggttattttacatatttattcac-acacgtgttaacttattttacaagtaatatcaagaaaaccatga |
99 |
Q |
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| T |
10166661 |
ctcctatgctaattgataagtaccagatttttggttattttacatatttattcacgatacgcattaacttgttttacaagtaatatcaagaaaaccaaga |
10166760 |
T |
|
| Q |
100 |
aatcatacaaatataaagtacttatgcttataataccagttaagctcattttacctatttcccttcaatttttgtaggtttttgagcttaaagaccaaga |
199 |
Q |
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| T |
10166761 |
aatcatacatatata-----cttatgcttataataccagttaagttcattttacctattttccttcaatttttgtaggtttttgagcttaaagaccaaga |
10166855 |
T |
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| Q |
200 |
tcggtaaagagcaataattctgagtcag |
227 |
Q |
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|||||||||||||||||||||||||| |
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| T |
10166856 |
ctggtaaagagcaataattctgagtcag |
10166883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 31100370 - 31100253
Alignment:
| Q |
29 |
tttcggttatttt-acatatttattcaca-cacgtgttaacttattttacaagtaatatcaagaaaac-catg-aaatcatacaaatataaagtacttat |
124 |
Q |
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||||||||||||| ||||| ||||||||| ||| | ||||||| ||||||||||||||||| ||||| ||| ||||||| |||||||||||| ||||| |
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| T |
31100370 |
tttcggttatttttacatacttattcacaacacttattaacttgttttacaagtaatatcatgaaaaatcatataaatcatgcaaatataaagtccttat |
31100271 |
T |
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| Q |
125 |
gcttataataccagttaa |
142 |
Q |
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|||||||| ||| |||| |
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| T |
31100270 |
acttataatgccaattaa |
31100253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 53292722 - 53292623
Alignment:
| Q |
99 |
aaatcatacaaatataaagtacttatgcttataataccagttaagctcattttacctatttcccttcaatttttgtaggtttttgagcttaaagaccaag |
198 |
Q |
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||||||| |||||||||||| | ||| |||||| ||||||||| |||||| ||||||||||||| || |||| |||||||||||||| ||||||| |
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| T |
53292722 |
aaatcatgcaaatataaagttcgtatatttataactatagttaagctacttttacatatttcccttcaa-ttatgtaagtttttgagcttaatgaccaag |
53292624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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