View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_high_65 (Length: 237)
Name: NF21197_high_65
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_high_65 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38999041 - 38998821
Alignment:
| Q |
1 |
aatcaacaaatagttcgtcgatatcgtcggaagttattttgcttgatagaaagatatctgaagttatgttggatccaattgagtattcaagaattgaatt |
100 |
Q |
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| T |
38999041 |
aatcaacaaatagttcgtcgatatcgtcggaagttattttgcttgatagaaagatatctgaagttatgttggatccaattgagtattcaagaattgaatt |
38998942 |
T |
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| Q |
101 |
tcctgacataagtgttgttaaggagaatcaacaaatggtttctcaatacttcaatcttgcttgtgcctcaagtaataacaattcaagaaagttgctacca |
200 |
Q |
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| T |
38998941 |
tcctgacataagtgttgttaaggagaatcaacaaatggtttctcaatacttcaatcttgcttgtgcctcaagtaacaacaattcaagaaagttgctacca |
38998842 |
T |
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| Q |
201 |
tttctccatcttggtgcttct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
38998841 |
tttctccatcttggtgcttct |
38998821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 217
Target Start/End: Original strand, 32205166 - 32205310
Alignment:
| Q |
76 |
caattgagtattcaagaattgaatttcctgacataagtgttgttaaggagaatcaacaaatggtttctcaatacttcaatcttgcttgtgcctcaagtaa |
175 |
Q |
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||||||| || |||||||| ||||||||| | ||||||||| ||| ||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
32205166 |
caattgaatactcaagaatcgaatttccttatataagtgtttttagtgagcatcaacaaatggtttctgaatatttcaatcttgcttgtgcctcaagtaa |
32205265 |
T |
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| Q |
176 |
taac---aattcaagaaagttgctaccatttctccatcttggtgc |
217 |
Q |
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| T |
32205266 |
caacaaaaattgaagaaagatactaccttttcttcatcttggtgc |
32205310 |
T |
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