View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_10 (Length: 574)
Name: NF21197_low_10
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 163 - 558
Target Start/End: Original strand, 33724291 - 33724682
Alignment:
| Q |
163 |
atctacaaatgtatgagattgcaagcaatgtagtgtgtcaatagtcaatactaatcaagagggataaactttatgtgagaatccatggaaaatgctagct |
262 |
Q |
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| T |
33724291 |
atctacaaatgtatgagattgcaagcaatgtagtgtgtca-------atactaatcaagaggaataaactttatgtgagaatccatggaaaatgctagct |
33724383 |
T |
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| Q |
263 |
acctattataaaattgactaagcttttggtaaatgtacaaattcataaactcgtcaaagatgaccgtacgaattttcttccatatatactagtcatgtta |
362 |
Q |
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| T |
33724384 |
acctattataaaattgactaagcttttggtaaatgtacaaattcataaactcgtcaaagatgaccgtacgaattttcttccatatatactagtcatgtta |
33724483 |
T |
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| Q |
363 |
aaggaagcatgcaagaagaagaggtacatgtgaagatgaaaccaagcaaaatagtaagagaggcaaagtttgaannnnnnnncttaagtattaacgcatc |
462 |
Q |
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| T |
33724484 |
aaggaagcatgcaagaagaagaggtacatgtgaagatgaaaccaagcaaaatagtaagagaggcaaagtttgaattttttttcttaagtattaacgcatc |
33724583 |
T |
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| Q |
463 |
aaattttaacgaaatcacg---ttataaatcaatgtatatgtttatttttcttattagataataaaaaatgtatacgttatgtctagcactagttatag |
558 |
Q |
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| T |
33724584 |
aaattttaacgaaatcacgttattataaatcaatgaatatgtttatttttcttattagataataaaaaatgtatatgttatgtctagcactagttatag |
33724682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 33724063 - 33724219
Alignment:
| Q |
5 |
agtgagatgaaaatatacaaaaatcaaggggacttatctaacataaattcagtgtaaccacacacacgatttaaattttatgtatgcaaccatcgatcat |
104 |
Q |
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| T |
33724063 |
agtgatatgaaaatata-aaaaatcaaggggacttatctaacataaattcagtgtaaccacacacacgatttaaattttatgtatgcaaccatcgatcat |
33724161 |
T |
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| Q |
105 |
cataattatctttaatttcttcttgttcaagttaatataatgataatgtcatgttaat |
162 |
Q |
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| T |
33724162 |
cataattatctttaatttcttcttgttcaagttaatataatgataatgtcatgttaat |
33724219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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