View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_11 (Length: 559)
Name: NF21197_low_11
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 16 - 553
Target Start/End: Complemental strand, 41086225 - 41085688
Alignment:
| Q |
16 |
atttttgcaaaggttgtagacgttattggaccaaaggtggctctcttcggaatgttcctgttggtggtggctgccgcaaaaaccgccgtggaaaggcggt |
115 |
Q |
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| T |
41086225 |
atttttgcaaaggttgtagacgttattggaccaaaggtggctctcttcggaatgttcctgttggtggtggctgccgcaaaaaccgtcgtggaaaggcggt |
41086126 |
T |
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| Q |
116 |
cagaaattctcatgccgaccgtctttccgcgaattatggctctgctgacgatgaagatcatcagcaaaaccaaaacaatggttcccgcgatatagatatg |
215 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086125 |
cagaaattctcagactgaccgtctttccgcgaattatggctctgctgacgatgaagatcatcagcaaaaccaaaacaatggttcccgcgatatagatatg |
41086026 |
T |
|
| Q |
216 |
gctgttgttttcgccaaattcttaaaccaaaatccaaatagtactcatcatggtgatgaggaattggaaattgagagtgaggttaataataatggactgt |
315 |
Q |
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| T |
41086025 |
gctgttgttttcgccaaattcttaaaccaaaatccaaatagtactcatcatggtgatgaggaattggaaattgagagtgaggttaataataatggactgt |
41085926 |
T |
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| Q |
316 |
cttcttcttccaacaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctcataaaccttttgatgaggt |
415 |
Q |
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| T |
41085925 |
cttcttcttccaacaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctcataaaccttttgatgaggt |
41085826 |
T |
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| Q |
416 |
tcagaattatggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatgaagatgtggtacaagatgtt |
515 |
Q |
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| T |
41085825 |
tcagaattatggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatgaagatgtggtacaagatgtt |
41085726 |
T |
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| Q |
516 |
ctatggcctgattctaatgctatgaatatgatgatgtc |
553 |
Q |
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| T |
41085725 |
ctatggcctgattctaatgctatgaatatgatgatgtc |
41085688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 322
Target Start/End: Complemental strand, 23939648 - 23939535
Alignment:
| Q |
206 |
tatagatatggctgttgttttcgccaaattcttaaaccaaaatccaaatagtactcatcatggtgatgaggaattggaaattgagagtgaggttaataat |
305 |
Q |
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| T |
23939648 |
tatagacatggctcttgtttttgccaaaattttaaaccaaaatctaa---gtactcatcatggtgacaagaaattagaaattgagattgaggctcacaat |
23939552 |
T |
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| Q |
306 |
aatggactgtcttcttc |
322 |
Q |
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|||| |||||||||| |
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| T |
23939551 |
aatgagatgtcttcttc |
23939535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 24878912 - 24878994
Alignment:
| Q |
16 |
atttttgcaaaggttgtagacgttattggaccaaaggtggctctcttcggaatgttcctgttggtggtggctgccgcaaaaac |
98 |
Q |
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||||||||||||| || ||| | |||||||| |||||||| || || | |||||||||||||||||||||||| | |||||| |
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| T |
24878912 |
atttttgcaaaggatgcagaaggtattggacaaaaggtggatccctcagaaatgttcctgttggtggtggctgcagaaaaaac |
24878994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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