View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_12 (Length: 558)
Name: NF21197_low_12
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 35820391 - 35820117
Alignment:
| Q |
24 |
ggttggacagtgaaagcctcgggacactatgaagtctgggctagtagaatcaagtttctagtcagcgacacacttagtaagaacaatctgannnnnnnat |
123 |
Q |
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| T |
35820391 |
ggttggacagtgaaagcctcgggacactatgaagtctgggctagtagaatcaagtttctagtcagcgacacacttagtaagaacaatctgatttttttat |
35820292 |
T |
|
| Q |
124 |
cttattttttcatctctaaatatcaaaactttatttacatcataataaattattctattgannnnnnncccttatgaaacagccaaattttatgtataat |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35820291 |
cttattttttcatctctaaatatcaaaactttatttacatcataataaattattctattgatttttttcccttatgaaacagccaaattttatgtataat |
35820192 |
T |
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| Q |
224 |
caatatcaaaataaaaacttagcagaaaaaacatatgggttaaatgtatttttaatctgacattggatgttttca |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
35820191 |
caatatcaaaataaaaacttagcagaaaaaacatatgggttaaatgtatttttaatccgacattggatcttttca |
35820117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 332 - 456
Target Start/End: Complemental strand, 35820095 - 35819971
Alignment:
| Q |
332 |
gccatcggatttattttttggttatgtatccacttttcagtattatttactagacagcatctattgagactttctttagcgatttagtttataatttgaa |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35820095 |
gccatcggatttattttttggttatgtatccacttttcagtattatttactagacagcatctattgagactttctttagcgatttagtttataatttgaa |
35819996 |
T |
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| Q |
432 |
tatactaaaatgtagatcaacaact |
456 |
Q |
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| T |
35819995 |
tatactaaaatgtagatcaacaact |
35819971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 38712045 - 38712005
Alignment:
| Q |
130 |
ttttcatctctaaatatcaaaactttatttacatcataata |
170 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||| |
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| T |
38712045 |
ttttcatctccaaatatcaaaactttataaacatcataata |
38712005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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