View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_14 (Length: 493)
Name: NF21197_low_14
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Original strand, 40954345 - 40954782
Alignment:
| Q |
11 |
cagagagcagctgagtggggtttggtgctcagaacagacgctgaaaccgggaaaccacaaggagtgggagttagaaactccggtgacgatgaacagaatg |
110 |
Q |
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| T |
40954345 |
cagagagcagctgagtggggtttggtgctcagaacagacgctgaaaccgggaaaccacaaggagtgggagttagaaactccggtgacgatgaacagaatg |
40954444 |
T |
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| Q |
111 |
gcaagttctccggcaaaaggaattccaataactccggcagagtttccggtgactcttccgacggtggtgatcctcgcgggtttccgagagtttcagagga |
210 |
Q |
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| T |
40954445 |
gcaagttctccggcaaaaggaattccaataactccggcagagtttccggtgactcttccgacggtggtgatcctcgcgggtttccgagagtttcagagga |
40954544 |
T |
|
| Q |
211 |
tttgaaagatgctttatcagcttttcaacaaactttcgtggtttcggatgctaccaaacccgattacccaattatgtatgcaagtgcaggtttcttcaac |
310 |
Q |
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| T |
40954545 |
tttgaaagatgctttatcagcttttcaacaaactttcgtggtttcggatgctaccaaacccgattacccaattatgtatgcaagtgcaggtttcttcaac |
40954644 |
T |
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| Q |
311 |
atgacgggttatacttcaaaagaagtcataggaagaaactggtaaaaaatttctttactatttatcttttaaaatattactatctacaacctacttaatt |
410 |
Q |
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| T |
40954645 |
atgacgggttatacttcaaaagaagtcataggaagaaactggtaaaaaaattctttactatttatcttttaaaatattactatctacaacctacttaatt |
40954744 |
T |
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| Q |
411 |
tatagaacaaaaaatatttcacttacacccatttttca |
448 |
Q |
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| T |
40954745 |
tatagaacaaaaaatatttcacttacacccatttttca |
40954782 |
T |
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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 22793020 - 22793178
Alignment:
| Q |
197 |
agagtttcagaggatttgaaagatgctttatcagcttttcaacaaactttcgtggtttcggatgctaccaaacccgattacccaattatgtatgcaagtg |
296 |
Q |
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|||||||| |||||||||| ||||||| ||||||| |||||||| || || || ||||| |||||||| ||||| |||||||| || |||||||| |||| |
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| T |
22793020 |
agagtttcggaggatttgagagatgctctatcagcatttcaacagacatttgttgtttctgatgctactaaaccggattacccgatcatgtatgctagtg |
22793119 |
T |
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| Q |
297 |
caggtttcttcaacatgacgggttatacttcaaaagaagtcataggaagaaactggtaa |
355 |
Q |
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| || || || |||||||| || |||||||| ||||| || |||||||||||||||||| |
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| T |
22793120 |
ctgggttttttaacatgacagggtatacttccaaagaggttataggaagaaactggtaa |
22793178 |
T |
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