View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_17 (Length: 489)
Name: NF21197_low_17
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 193 - 478
Target Start/End: Complemental strand, 31708570 - 31708275
Alignment:
| Q |
193 |
attttggataacatgtttttgttccataataaaatactactactactttcttggtttaatatggaaaacatagtttgcttttgtttgaacttataaacag |
292 |
Q |
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| T |
31708570 |
attttggataacatgtttttgttccataataaaataccactactactttcttggtttaatatggaaaacatagtttgcttttgtttaaatttataaacag |
31708471 |
T |
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| Q |
293 |
taacactactttggaaaa------------acctttgaaacttcaacaaaatcaaggtggcacattgatttttggcaaatttactgtaattctaaacatg |
380 |
Q |
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| T |
31708470 |
taacactactttggattagaggtttttttaacctttgaaacttcaacaaaatcaaggtggcacattgatttttggcaaatttactgtaattctaaacatg |
31708371 |
T |
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| Q |
381 |
aacttgaatatcataaaaatccatttgaaaaatgatatcaatttaagtagnnnnnnnnnncaccaattaccatgaaaccaaacacaaattttgttcat |
478 |
Q |
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| T |
31708370 |
aacttgaatatcataaaaatccatttgaaaaatgatatc-atttaactag-tttttttctcaccaatcaccatgaaaccaaacacaaattttgttcat |
31708275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 31708783 - 31708606
Alignment:
| Q |
13 |
tctctctgttcccttaccttttgttttgggttggagtggggcccttagaaacaattgttgcagtcaatagttgtttgtttcttttaagtgcataatacta |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31708783 |
tctctctgttcccttaccttttgttttgggttggagtggggcccttagaaacaattgttgcagtcaatagttgtttgtttcttttaagtgcataa---ta |
31708687 |
T |
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| Q |
113 |
ctgactttgttatatatattgcatgcgtatcaagctatcattctattctataatcacaaaactaaatccataatgcttaga |
193 |
Q |
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| T |
31708686 |
ctgactttgttatatatattgcatgtgtatcaagctatcattctattctataatcacaaaactaaatccataatgcttaga |
31708606 |
T |
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