View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21197_low_18 (Length: 469)
Name: NF21197_low_18
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 455
Target Start/End: Original strand, 14904925 - 14905372
Alignment:
| Q |
8 |
tgagaagaagaattaattgaagcaaaaacacaagttcattgcatatggctctgatctatgtagcagataggtcccgtcctccttttaccttttcttagct |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14904925 |
tgagaagaagaattacttgaagcaaaaacacaagttcattgcatatggctctgatctatgtagcagataggtcccgtcctccttttaccttttcttagcc |
14905024 |
T |
|
| Q |
108 |
tacttatttttgttatatcttatgttaggatctaacatgaaagttatacaatatatggttcctcctatgtggctaaaatatgtatatgttagaggtcttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14905025 |
tacttatttttgttatatcttatgttaggatctaacatgaaagttatacaatatatggttcctcctatgtggctaaaatatgtatatgttagaggtcttt |
14905124 |
T |
|
| Q |
208 |
gaaatatgggtaaagacaaataaagtgtgttcttgtaagggtatataggacatggttgaaaagatgaaaataaaatatgacaaatactaaataaacttga |
307 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14905125 |
gaaatataggtaaagacaaataaagtgtgttcttgtaagggtatataggacatggttgaaaagatgaaaataaaatatgacaaatactaaataaacttga |
14905224 |
T |
|
| Q |
308 |
gctgttgaacatgttgttgttgaattcttaagtcttagaccctaggtacaaattcaaattttgataatttcagttcacttgaagcaaggaaattaagaga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
14905225 |
gctgttgaacatgttgttgttgaattcttaagtcttagaccctaggtacaaattcaaattttgataatttcagttcacttgaggcaaagaaattaaaaga |
14905324 |
T |
|
| Q |
408 |
cttgttggcaactcgtggagtgtagtgatgtgggggaagggttccaaa |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14905325 |
tttgttggcaactcgtggagtgtagtgatgtgggggaagggttccaaa |
14905372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University