View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_25 (Length: 409)
Name: NF21197_low_25
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 33033109 - 33032724
Alignment:
| Q |
8 |
tagcataggatgattatgtaattaaatcaaaaaacatggtacataaatgtgtatctatgccaagactaattgtctttcacaaaggagacaaatcatagga |
107 |
Q |
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| T |
33033109 |
tagcataggatgattatgtaattaaatcaaaaaacatggtaaataaatgtgtatctatgccaagactaattgtctttcacaaaggagacaaatcatagga |
33033010 |
T |
|
| Q |
108 |
tgattatgttcactaacacaataatttcttgttttcatgatatcttcatatgagctcataggttatcctaattgcaggacaaaataaaattttcactgct |
207 |
Q |
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| T |
33033009 |
tgattatgttcactaacacaataatttcttgttttcatgatatcttcatatgagctcataggttatcctaattgcaggacaaaataaaattttcactgct |
33032910 |
T |
|
| Q |
208 |
aaagcatgaaacaaaacattgatcttgaagtagaagcttgtgcagaatatgaatctgaagttacaagccaacttgattctaatgtatcaactcaagaaac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33032909 |
aaagcatgaaacaaaacattgatcttgaagtagaagcttgtgcagaatatgaatctgaagttacaagccaagttgattctaatgtatcaactcaagaaac |
33032810 |
T |
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| Q |
308 |
cttttacaacatcacaaatcctaattcatatgatatatctcttgacttaagtctaaatttcaagaacagtgagataccaacaacaa |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33032809 |
cttttacaacatcacaaatcctaattcatatgatatatctcttgacctaagtctaaatttcaagaacagtgagataccaacaacaa |
33032724 |
T |
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