View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_26 (Length: 409)
Name: NF21197_low_26
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_26 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 221 - 409
Target Start/End: Original strand, 50531268 - 50531454
Alignment:
| Q |
221 |
gcttacggaaatgaaatttgaagtctataccttttacagctcaaaacttttattacaagtcaaatttctgaggactttccttaaattttaaaaaattgat |
320 |
Q |
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| T |
50531268 |
gcttacggaaatgaaatttgaagtctataccttttacagctcaaaacttttattacaagtcaaatttctgaggactttccttaaattttaaaaatttgat |
50531367 |
T |
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| Q |
321 |
tcctttagccataatagattgctgaccgtgtttaccaaagnnnnnnnnnnnttctaaccatgttatgcattaagtggataacttaatcc |
409 |
Q |
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| T |
50531368 |
tcctttagccataatagattgctgaccgtgtttaccaaag--aaaaaaaaattctaaccatgttatgcattaagtggataacttaatcc |
50531454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 50531108 - 50531225
Alignment:
| Q |
87 |
gatatgaaatgaacctttaaccatcgttttatttttgttaaaaagaaaactatttacttaaatacaaacccttaccacttagattggtcgcatgcaagta |
186 |
Q |
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| T |
50531108 |
gatatgaaatgaacctttaaccatcattttatttttgttaaaaagaaaactatttacttaaatacaaacccttaccacttagattggtcgcatgcaagta |
50531207 |
T |
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| Q |
187 |
aatatgaccttcattcaa |
204 |
Q |
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| T |
50531208 |
aatatgaccttcattcaa |
50531225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 50531897 - 50531815
Alignment:
| Q |
1 |
atcctcttctcttctcttctcctcctagccatccttttcatgacgttacatatcattaatatactcttccgtattttttgtcg |
83 |
Q |
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| T |
50531897 |
atcctcttctcttctcttctcctcctagccatccttttcatgacgttacatatcattaatatactcttccgtattttttgtcg |
50531815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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