View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_27 (Length: 386)
Name: NF21197_low_27
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_27 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 11169878 - 11170253
Alignment:
| Q |
11 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
110 |
Q |
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| T |
11169878 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
11169977 |
T |
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| Q |
111 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg |
210 |
Q |
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| T |
11169978 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg |
11170077 |
T |
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| Q |
211 |
gtaggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattcaaagggacaaaggattgacatccctaaatgtaaaatctt |
310 |
Q |
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| T |
11170078 |
gtaggaatcgtggtattcctaggaattattacgcccatgaggtcccctttcatattaattccaagggacaaaggattgacatccctcaatgtcaaatctt |
11170177 |
T |
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| Q |
311 |
aaaccttttcaaaaatcaccccatttgataaaaaagcatggacagcggcgcaatatgcaaccgcctcatctgcatt |
386 |
Q |
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| T |
11170178 |
gaaacttttcacaaatcgcaccacttgctataaaagcatggacagcagcgccatatgcaaccgcctcatctacatt |
11170253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 11208700 - 11209075
Alignment:
| Q |
11 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
110 |
Q |
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| T |
11208700 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctag |
11208799 |
T |
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| Q |
111 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctatt |
209 |
Q |
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| T |
11208800 |
caagttgttgtccttagttgtttgcctctcaccctcataaacggaaattgata-aactattttggttgggttcactggtggtgtatacatcttccatatt |
11208898 |
T |
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| Q |
210 |
ggtaggaatcgtggtattcctaggaattattacgctcatgaggtcccctttcatattaattcaaagggacaaaggattgacatccctaaatgtaaaatct |
309 |
Q |
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| T |
11208899 |
ggtaggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggattgacttccctcaatgtcaaatct |
11208998 |
T |
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| Q |
310 |
taaaccttttcaaaaatcaccccatttgataaaaaagcatggacagcggcgcaatatgcaaccgcctcatctgcatt |
386 |
Q |
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| T |
11208999 |
tgaaacttttcacaaatctcaccacttgctataaaagcatggacagcagcgccatatgcaactgcctcatctgcatt |
11209075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 386
Target Start/End: Original strand, 11275272 - 11275637
Alignment:
| Q |
21 |
taagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttg |
120 |
Q |
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|||||||||||||| || |||||||||||||||||| || || ||||| || ||||| |||||||||||||||| ||||| |||||||||||||||| |
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| T |
11275272 |
taagatgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttg |
11275371 |
T |
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| Q |
121 |
tccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgactt-ttccctattggtaggaatc |
219 |
Q |
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| T |
11275372 |
tccttagttgttttcctctcaccctcataaatactaattgcaacaaatttttggttaggtatagttgtggtgaat-acttcttccttgttggtaggaatc |
11275470 |
T |
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| Q |
220 |
gtggtattcctaggaattattacgctcatgaggtcccctttcatattaattcaaagggacaaaggattgacatccctaaatgtaaaatcttaaacctttt |
319 |
Q |
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|||||||||| |||| |||| |||||| ||| || | ||||||| || |||||| ||||| || ||||| ||||| ||||||| || ||||| |
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| T |
11275471 |
atggtattcctgggaaatattgttttcatgattccccattgtgttttaattccaatggacaatggattaacttccctcaatgtcaaatcttgaaactttt |
11275570 |
T |
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| Q |
320 |
caaaaatcaccccatttgataaaaaagcatggacagcggcgcaatatgcaaccgcctcatctgcatt |
386 |
Q |
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| T |
11275571 |
cacaaagctcaccactcaatataaaagcatggatagcagcgccatatgcaaccgcctcatctgcatt |
11275637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 11196117 - 11196189
Alignment:
| Q |
82 |
ggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcctctcaccctcataaacat |
154 |
Q |
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| T |
11196117 |
ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacat |
11196189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 11155697 - 11155746
Alignment:
| Q |
109 |
agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat |
158 |
Q |
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| T |
11155697 |
agcaagttgttttccctagttattttcctctcaccttcataaacatgaat |
11155746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 11132411 - 11132471
Alignment:
| Q |
105 |
tcctagcaagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaata |
165 |
Q |
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| T |
11132411 |
tcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaata |
11132471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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