View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21197_low_29 (Length: 371)

Name: NF21197_low_29
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21197_low_29
NF21197_low_29
[»] chr5 (11 HSPs)
chr5 (20-361)||(30048294-30048635)
chr5 (198-356)||(16597894-16598047)
chr5 (20-160)||(16596514-16596654)
chr5 (202-361)||(10275516-10275674)
chr5 (184-290)||(12019839-12019945)
chr5 (184-290)||(37659777-37659883)
chr5 (184-290)||(7102875-7102981)
chr5 (184-290)||(16795219-16795325)
chr5 (184-290)||(30696346-30696452)
chr5 (184-290)||(40370748-40370854)
chr5 (205-293)||(15065838-15065926)
[»] chr3 (5 HSPs)
chr3 (170-344)||(22930793-22930968)
chr3 (197-366)||(9698555-9698724)
chr3 (170-361)||(43548694-43548885)
chr3 (202-290)||(21848178-21848266)
chr3 (184-290)||(54170845-54170951)
[»] chr4 (6 HSPs)
chr4 (197-366)||(27187113-27187282)
chr4 (179-361)||(31355658-31355840)
chr4 (184-292)||(43682681-43682789)
chr4 (184-290)||(44148108-44148214)
chr4 (319-364)||(25171114-25171159)
chr4 (318-366)||(50912836-50912884)
[»] chr2 (5 HSPs)
chr2 (204-361)||(13270049-13270206)
chr2 (196-280)||(42515385-42515469)
chr2 (184-290)||(8051942-8052048)
chr2 (184-290)||(36671601-36671707)
chr2 (202-359)||(17256261-17256418)
[»] chr8 (8 HSPs)
chr8 (202-361)||(1287806-1287965)
chr8 (184-290)||(201185-201291)
chr8 (184-290)||(316022-316128)
chr8 (184-290)||(30409304-30409410)
chr8 (184-290)||(43810984-43811090)
chr8 (184-290)||(28647461-28647567)
chr8 (184-290)||(41946366-41946472)
chr8 (23-97)||(17784966-17785040)
[»] scaffold0044 (1 HSPs)
scaffold0044 (184-290)||(48366-48472)
[»] chr7 (2 HSPs)
chr7 (184-290)||(27757947-27758053)
chr7 (184-290)||(7943584-7943690)
[»] chr6 (6 HSPs)
chr6 (184-290)||(8319005-8319111)
chr6 (184-290)||(17880980-17881086)
chr6 (184-290)||(27571233-27571339)
chr6 (188-290)||(17160643-17160745)
chr6 (184-361)||(21414100-21414277)
chr6 (208-281)||(23254611-23254684)
[»] chr1 (3 HSPs)
chr1 (184-290)||(26312563-26312669)
chr1 (184-290)||(39794945-39795051)
chr1 (300-365)||(25589982-25590047)
[»] scaffold0336 (1 HSPs)
scaffold0336 (318-366)||(386-434)


Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 30048635 - 30048294
Alignment:
Q  20 caacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccataacctc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30048635 caacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccagaacctc 30048536  T
Q  120 ctccttttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcgcccttagagttacttttgcctttcttgaaattcttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30048535 ctccttttgaagattcagttttatcactggctttgttcttctctttagaatttgaccagtttcgcccttagagttacttttgcctttcttgaaattcttt 30048436  T
Q  220 ttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaaag 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30048435 ttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaatg 30048336  T
Q  320 aactctgcatttcttcaattttcaaagtttgcacatcctttg 361  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  30048335 aactctgcatttcttcaattttcaaagttttcacatcctttg 30048294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 198 - 356
Target Start/End: Original strand, 16597894 - 16598047
Alignment:
Q  198 tttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacatt 297  Q
    ||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||           
T  16597894 tttgcctttcttgaaattcttcttatcataaccatctttcttcacagtttgaacttgcaaagcttgttgaatttatctttcactgcttctttc-----cc 16597988  T
Q  298 attaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatc 356  Q
    || |||||| |||| ||||||||||||| || ||||| ||| |||||||||| ||||||    
T  16597989 atcaattcatgtgcttccaaagaactcttcagttcttgaatcttcaaagttttcacatc 16598047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 16596514 - 16596654
Alignment:
Q  20 caacattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttgccttgataattaccataacctc 119  Q
    ||||| ||||||||||||||||||||  |||| |||||||||||   || ||||||||||||||| ||  |||| |||||||| ||||| ||| | ||||    
T  16596514 caacactcagaagcataatgaccaaatatttctcaattataacattgtaccttcttcttatcaaaacccctctttttgccttggtaatttccaaagcctc 16596613  T
Q  120 ctccttttgaagattcagttttatcactggctttgttcttc 160  Q
    |||||||||||||||||| ||| || || ||||| ||||||    
T  16596614 ctccttttgaagattcagctttgtcgctagctttcttcttc 16596654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 361
Target Start/End: Complemental strand, 10275674 - 10275516
Alignment:
Q  202 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 301  Q
    ||||||||||| || ||| ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||| ||| ||||||||||  |  || |    
T  10275674 cctttcttgaagttatttctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatcttt-actgcttctttcagttaccatca 10275576  T
Q  302 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 361  Q
    ||||| |||| ||||| |||||||||| ||| ||||| ||||| || | |||||||||||    
T  10275575 attcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 10275516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 12019945 - 12019839
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  12019945 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 12019846  T
Q  284 ttctttc 290  Q
    |||||||    
T  12019845 ttctttc 12019839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 37659883 - 37659777
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  37659883 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 37659784  T
Q  284 ttctttc 290  Q
    |||||||    
T  37659783 ttctttc 37659777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 7102875 - 7102981
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7102875 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7102974  T
Q  284 ttctttc 290  Q
    |||||||    
T  7102975 ttctttc 7102981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 16795325 - 16795219
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  16795325 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 16795226  T
Q  284 ttctttc 290  Q
    |||||||    
T  16795225 ttctttc 16795219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 30696452 - 30696346
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  |||||| |||||||||||||| | |    
T  30696452 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgtcgaattgatctttcattgc 30696353  T
Q  284 ttctttc 290  Q
    |||||||    
T  30696352 ttctttc 30696346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 40370748 - 40370854
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||| ||||| | |    
T  40370748 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatttttcattgc 40370847  T
Q  284 ttctttc 290  Q
    |||||||    
T  40370848 ttctttc 40370854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 15065838 - 15065926
Alignment:
Q  205 ttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcaga 293  Q
    |||||||| |||||||||||| | ||||| |||||||  || |||||||| || |||||||||||| || ||||||| ||||| |||||    
T  15065838 ttcttgaagttctttttatcagaatcatctttcttcatggtctgaacttgcaaggcttgttgaattcatatttcactgcttctctcaga 15065926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 170 - 344
Target Start/End: Original strand, 22930793 - 22930968
Alignment:
Q  170 tttgaccagtttcg-cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaa 268  Q
    |||||||||||||  ||||| |||||| | |||||||||||||| ||||| ||| || | |||||  | || | |||||||||||| ||   ||||||||    
T  22930793 tttgaccagtttcctcccttggagttattcttgcctttcttgaagttcttcttaacaaaatcatctctattaatagtttgaacttgcaattgttgttgaa 22930892  T
Q  269 ttgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaa 344  Q
    ||||||||||||||||||||||| |||  || |||||| |||||||||||||||| |||| ||||||||| |||||    
T  22930893 ttgatctttcactacttctttcatacaccatcaattcatgtgcctccaaagaactatgcaattcttcaatcttcaa 22930968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 366
Target Start/End: Complemental strand, 9698724 - 9698555
Alignment:
Q  197 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat 296  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |     
T  9698724 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac 9698625  T
Q  297 tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 366  Q
     || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||||| ||||    
T  9698624 catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattct 9698555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 170 - 361
Target Start/End: Complemental strand, 43548885 - 43548694
Alignment:
Q  170 tttgaccagtttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaat 269  Q
    |||||||||||||  ||||||| ||  | || ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||| ||  |||||||||||    
T  43548885 tttgaccagtttcctccttagaatttttcttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttttagggcttgttgaat 43548786  T
Q  270 tgatctttcactacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 361  Q
    |||||||||||| ||||||||||  |  ||  ||||| |||| || || |||| ||||| ||| ||||| ||||| || | |||||||||||    
T  43548785 tgatctttcactgcttctttcagttaccatcgattcatgtgcttctaatgaacactgcaattcctcaatcttcaatgtcttcacatcctttg 43548694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 202 - 290
Target Start/End: Complemental strand, 21848266 - 21848178
Alignment:
Q  202 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttc 290  Q
    ||||||||||| ||||| |||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | ||||||||    
T  21848266 cctttcttgaagttcttcttatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttc 21848178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 54170845 - 54170951
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  54170845 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 54170944  T
Q  284 ttctttc 290  Q
    |||||||    
T  54170945 ttctttc 54170951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 366
Target Start/End: Complemental strand, 27187282 - 27187113
Alignment:
Q  197 ttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacat 296  Q
    |||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  |||| |||||||||||||||||| ||||||||||  |     
T  27187282 ttttccctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttac 27187183  T
Q  297 tattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 366  Q
     || |||||| |||| ||||| |||||||||| ||| ||||| ||||| || | ||||||||||| ||||    
T  27187182 catcaattcatgtgcttccaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattct 27187113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 361
Target Start/End: Complemental strand, 31355840 - 31355658
Alignment:
Q  179 tttcgcccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttc 278  Q
    |||| |||||||||||  | || | ||||||||| |||||  ||||||  |||| |||||| | ||||||||||||||  ||||||||||||||||||||    
T  31355840 tttcccccttagagtttttcttccttttcttgaagttcttcctatcattatcatacttcttgatagtttgaacttgtagggcttgttgaattgatctttc 31355741  T
Q  279 actacttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 361  Q
    ||| ||| ||||||  |  || |||||| |||| ||||| |||||||||| ||||||||| ||||| || | |||||||||||    
T  31355740 acttcttgtttcagttaccatcaattcatgtgcttccaatgaactctgcaattcttcaatcttcaatgtcttcacatcctttg 31355658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 292
Target Start/End: Original strand, 43682681 - 43682789
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || |||||||| || |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| |    
T  43682681 cccttagagtttttcttccctttctttaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgc 43682780  T
Q  284 ttctttcag 292  Q
    |||||||||    
T  43682781 ttctttcag 43682789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 44148214 - 44148108
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  44148214 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 44148115  T
Q  284 ttctttc 290  Q
    |||||||    
T  44148114 ttctttc 44148108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 25171159 - 25171114
Alignment:
Q  319 gaactctgcatttcttcaattttcaaagtttgcacatcctttgctt 364  Q
    |||||||||| ||||||||| |||| ||||| ||||||||||||||    
T  25171159 gaactctgcaattcttcaatcttcatagttttcacatcctttgctt 25171114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 50912884 - 50912836
Alignment:
Q  318 agaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 366  Q
    ||||||||||| ||||||||| |||| ||| | ||||||||||||||||    
T  50912884 agaactctgcagttcttcaatcttcatagtcttcacatcctttgcttct 50912836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 361
Target Start/End: Original strand, 13270049 - 13270206
Alignment:
Q  204 tttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaat 303  Q
    ||||||||| || ||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||| ||||||||||  |  || |||    
T  13270049 tttcttgaagttattcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgcttctttcagttaccatcaat 13270148  T
Q  304 tcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 361  Q
    ||| |||| || || |||||||||| ||||||||| ||||| || | |||||| ||||    
T  13270149 tcatgtgcttctaatgaactctgcaattcttcaatcttcaatgtcttcacatcttttg 13270206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 42515469 - 42515385
Alignment:
Q  196 cttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcac 280  Q
    ||||| ||||||||||| |||||  ||||||  ||||||||||| | ||||||||||||||  ||||||||||||||||||||||    
T  42515469 ctttttcctttcttgaagttcttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcac 42515385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 8052048 - 8051942
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  8052048 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8051949  T
Q  284 ttctttc 290  Q
    |||||||    
T  8051948 ttctttc 8051942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 36671707 - 36671601
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  36671707 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 36671608  T
Q  284 ttctttc 290  Q
    |||||||    
T  36671607 ttctttc 36671601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 202 - 359
Target Start/End: Complemental strand, 17256418 - 17256261
Alignment:
Q  202 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 301  Q
    ||||||||||| |||||  ||||||| ||||||||  | | |||||||||||| ||| ||||||||||||||||||||   ||||| ||||| |  || |    
T  17256418 cctttcttgaagttcttcctatcataatcatcctttctgatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatca 17256319  T
Q  302 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctt 359  Q
    ||||| | || ||||  ||||| |||| |||| |||| ||||| |||| |||||||||    
T  17256318 attcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatcctt 17256261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 361
Target Start/End: Complemental strand, 1287965 - 1287806
Alignment:
Q  202 cctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattatta 301  Q
    ||||||||||| |||||  ||||||  ||||||||||| | |||||||| |||||  ||||||| ||||||||||||||| ||||||||||  |  || |    
T  1287965 cctttcttgaagttcttcctatcattatcatccttcttgatagtttgaatttgtagggcttgttaaattgatctttcactgcttctttcagttaccatca 1287866  T
Q  302 attcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 361  Q
    ||||| |||| || || |||||||||| ||| ||||| ||||| || | |||||||||||    
T  1287865 attcatgtgcttctaatgaactctgcaattcctcaatcttcaatgtcttcacatcctttg 1287806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 201185 - 201291
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  201185 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 201284  T
Q  284 ttctttc 290  Q
    |||||||    
T  201285 ttctttc 201291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 316022 - 316128
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  316022 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 316121  T
Q  284 ttctttc 290  Q
    |||||||    
T  316122 ttctttc 316128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 30409304 - 30409410
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  30409304 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 30409403  T
Q  284 ttctttc 290  Q
    |||||||    
T  30409404 ttctttc 30409410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 43810984 - 43811090
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  43810984 cccttagagtttttcttccctttcttgaagttcttcatatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 43811083  T
Q  284 ttctttc 290  Q
    |||||||    
T  43811084 ttctttc 43811090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 28647567 - 28647461
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||| || || | |||||||||||| |  ||||||||||||||||||||| | |    
T  28647567 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcttttttgatagtttgaacttgcatggcttgttgaattgatctttcattgc 28647468  T
Q  284 ttctttc 290  Q
    |||||||    
T  28647467 ttctttc 28647461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 41946472 - 41946366
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || |||||||| || ||||   ||||| | ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  41946472 cccttagagtttttcttccctttcttaaagttctccctatcacaatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcaatgc 41946373  T
Q  284 ttctttc 290  Q
    |||||||    
T  41946372 ttctttc 41946366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 17784966 - 17785040
Alignment:
Q  23 cattcagaagcataatgaccaaacttttcacaattataacaacatatcttcttcttatcaaagcctttcttcttg 97  Q
    |||| ||||||| | |||||||| || ||||| ||| |||| |  ||||||||||||||||| ||||||||||||    
T  17784966 catttagaagcaaagtgaccaaaattctcacatttaaaacaccgaatcttcttcttatcaaaacctttcttcttg 17785040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 48366 - 48472
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| || ||||||||||||||||||||| | |    
T  48366 cccttagagtttttctttcctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgc 48465  T
Q  284 ttctttc 290  Q
    |||||||    
T  48466 ttctttc 48472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 27758053 - 27757947
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27758053 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27757954  T
Q  284 ttctttc 290  Q
    |||||||    
T  27757953 ttctttc 27757947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 7943584 - 7943690
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  7943584 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 7943683  T
Q  284 ttctttc 290  Q
    |||||||    
T  7943684 ttctttc 7943690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 8319005 - 8319111
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  8319005 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 8319104  T
Q  284 ttctttc 290  Q
    |||||||    
T  8319105 ttctttc 8319111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 17880980 - 17881086
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  17880980 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 17881079  T
Q  284 ttctttc 290  Q
    |||||||    
T  17881080 ttctttc 17881086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 27571233 - 27571339
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| ||||||||||| | |||||||||||| |  ||||||||||||||||||||| | |    
T  27571233 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 27571332  T
Q  284 ttctttc 290  Q
    |||||||    
T  27571333 ttctttc 27571339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 290
Target Start/End: Complemental strand, 17160745 - 17160643
Alignment:
Q  188 tagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttct 287  Q
    |||||||| | || |||||||||||  | ||  ||||||| ||||||||||| | |||||||||||  || ||||||||||||||||||||||| |||||    
T  17160745 tagagttattcttccctttcttgaatattttcctatcataatcatccttcttgatagtttgaactttcaaggcttgttgaattgatctttcactgcttct 17160646  T
Q  288 ttc 290  Q
    |||    
T  17160645 ttc 17160643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 361
Target Start/End: Original strand, 21414100 - 21414277
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||  |||||||||||   ||||||||||||||  ||||||||| ||||| |||||||      
T  21414100 cccttagagtttttcttccctttcttgaagttcttcctatcattatcatccttcttggtagtttgaacttgtagggcttgttgagttgatttttcactgt 21414199  T
Q  284 ttctttcagacattattaattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttg 361  Q
    |||||||||  |  || |||||| |||| || || ||||||| || ||| ||||| ||||| || | |||||||||||    
T  21414200 ttctttcagttaccatcaattcatgtgcttctaatgaactcttcaattcctcaatcttcaatgtcttcacatcctttg 21414277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 23254684 - 23254611
Alignment:
Q  208 ttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcact 281  Q
    ||||| |||||| ||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||||||    
T  23254684 ttgaagttctttctatcaaaatcatctttcttcatagtttgaacttgcaaggcttgttgaattgatctttcact 23254611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 26312669 - 26312563
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  26312669 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 26312570  T
Q  284 ttctttc 290  Q
    |||||||    
T  26312569 ttctttc 26312563  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 39795051 - 39794945
Alignment:
Q  184 cccttagagttacttttgcctttcttgaaattctttttatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactac 283  Q
    |||||||||||  | || ||||||||||| |||||  ||||||| |||||||| || | |||||||||||| |  ||||||||||||||||||||| | |    
T  39795051 cccttagagtttttcttccctttcttgaagttcttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgc 39794952  T
Q  284 ttctttc 290  Q
    |||||||    
T  39794951 ttctttc 39794945  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 25589982 - 25590047
Alignment:
Q  300 taattcacgtgcctccaaagaactctgcatttcttcaattttcaaagtttgcacatcctttgcttc 365  Q
    ||||||| |||| ||||| ||||| |||| ||||||||| |||| |||||  ||||||||||||||    
T  25589982 taattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttgcttc 25590047  T

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Target: scaffold0336 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 434 - 386
Alignment:
Q  318 agaactctgcatttcttcaattttcaaagtttgcacatcctttgcttct 366  Q
    ||||||||||| ||||||||| |||| ||| | ||||||||||||||||    
T  434 agaactctgcagttcttcaatcttcatagtcttcacatcctttgcttct 386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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