View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21197_low_3 (Length: 876)

Name: NF21197_low_3
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21197_low_3
NF21197_low_3
[»] chr4 (1 HSPs)
chr4 (14-867)||(2578793-2579616)


Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 14 - 867
Target Start/End: Original strand, 2578793 - 2579616
Alignment:
Q  14 caattttaatatttcaaaagattccttcttcatattttattagaactagaatttcaacacattccttcttagtagtattttattagagctagaacttaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2578793 caattttaatatttcaaaagattccttcttcatattttattagaactagaatttcaacacattccttcttagtagtattttattagagctagaacttaac 2578892  T
Q  114 tttggtatgaataaaacatagttatactattgaaattttggtggttatgcaggtgcagggggtgggtggtgagtaccttagtatgggtatccatccactt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  2578893 tttggtatgaataaaacatagttatactattgaaattttggtggttatgcaggtgcagg----gggtggtgagtaccttagtatgggtatccatccactt 2578988  T
Q  214 ttacgagtaattatccatgatgttttttgtaaggatttcaacgaatatgattccaatattatctatcatccctaatagaaaacaattgaatttttaagca 313  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2578989 ttacgagtaattatccatgatgttttttttaaggaattcaacgaatatgattccaatattatctatcatccctaatagaaaacaattgaatttttaagca 2579088  T
Q  314 tatttcttgtatactttttccatctccaa-nnnnnnnnnnnnnnnaatgtcattattttatcacttttgcatagatgaatttttatnnnnnnnngttata 412  Q
    || ||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||        ||||||    
T  2579089 ta-ttcttgtatactttttccatctccaatttttcgtttttttttaatgtcattattttatcacttttgcatagatgaatttttat--aaaaaagttata 2579185  T
Q  413 gtatacaatctttctctcgactgattaaaattcatggatccattcttgttattgatcaatccattctggttattgatcaatgcacttgtgtcactgttgg 512  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||                     |||||||||||| |||||||||    
T  2579186 gtatacaatctttctctccactgattaaaattcatggatccattcttgttattgatc---------------------aatgcacttgtgccactgttgg 2579264  T
Q  513 gaattctctattttcttcatgataggttggaaagattctttgccacacttgaaacatggtaatgatcatctttcaattaattaaggctannnnnnnnnct 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||    
T  2579265 gaattctctattttcttcatgataggttggaaagattctttgccacacttgaaacatggtaatgatcatctttcaattaattaaggtta--tttttttct 2579362  T
Q  613 ttgagaatgaaaagtgacacaattcctttgtataatccactggttgtccaattcattatgagatgtggactgattaaaattcgactannnnnnnnngtgg 712  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||         || |    
T  2579363 tagagaatgaaaagtgacacaattcctttgtataatccactggttgtccaattcattatgaaatgtggagtgattagaattcgactattttttttggtag 2579462  T
Q  713 ttcgaccatgtgcgttgtttacagactattgtgtaannnnnnnctctactgttttttcgactagttttatagtctaattgcgctgtaattgatagctttt 812  Q
    || |||||||||||||||||||| ||| ||||||||        |||| ||||||||||| |||||||||||||||| |||| |||||||||| || |||    
T  2579463 tttgaccatgtgcgttgtttacaaactgttgtgtaattttttt-tctattgttttttcgattagttttatagtctaactgcggtgtaattgatggccttt 2579561  T
Q  813 tagtctcttccgatacttcttgtgctctagagacagctttggtttttagtataat 867  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  2579562 tagtctcttccgatacttcttgtgctctagagacagctttagtttttagcataat 2579616  T

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