View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_32 (Length: 364)
Name: NF21197_low_32
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 44 - 296
Target Start/End: Complemental strand, 23203614 - 23203353
Alignment:
| Q |
44 |
acattcacaggaaatgccatagttttcaatgattgtatagatattaataccataacattcagattcagtataaaatgataacatgttgatgtgtatagga |
143 |
Q |
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| T |
23203614 |
acattcacaggcagttccgtagttttctatgattgtatagataataatatgataacgttcaggttagatataaaatagtaacatattgatatgtataaga |
23203515 |
T |
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| Q |
144 |
tgtttaa----agggttgatgcacttaaacctgaattgtttaagacgaagtccttgtttcttcctttcttatagttcaata-----ttgataatttttag |
234 |
Q |
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| T |
23203514 |
tgtttaatttgagggctgatgcacttaaatctgaattgtttaagagggagtctatgtttcttcttttcttatagttcaatatttatttgataatttctag |
23203415 |
T |
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| Q |
235 |
tgtttataaatattctgttgatgggatatttgggtttaacttttatgcttatcacaagatat |
296 |
Q |
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| T |
23203414 |
agttcataaaaattctgctgatgggatattggcttttaacttttatccttatcacaagatat |
23203353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 23202877 - 23202795
Alignment:
| Q |
268 |
gtttaacttttatgcttatcacaagatataatttcttaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
354 |
Q |
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| T |
23202877 |
gtttatcttctatgcttatcaca----acaatttattaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
23202795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 9488728 - 9488767
Alignment:
| Q |
315 |
ttgaatttattttaattgtaggttgtgaacgagccctttg |
354 |
Q |
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| T |
9488728 |
ttgaatttattttaattgtaggttgtgaaggagccctttg |
9488767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 13860450 - 13860394
Alignment:
| Q |
298 |
atttcttaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
354 |
Q |
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|||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||||| |
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| T |
13860450 |
atttattaatattgcttttcaatgtattttaattgtaggttgtgaagaagccctttg |
13860394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 13860625 - 13860582
Alignment:
| Q |
162 |
acttaaacctgaattgtttaagacgaagtccttgtttcttcctt |
205 |
Q |
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| T |
13860625 |
acttaaacctgaattgtttaagagggagtccatgtttcttcctt |
13860582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 291
Target Start/End: Complemental strand, 7687465 - 7687225
Alignment:
| Q |
56 |
aatgccatagttttcaatgattgtatagatattaataccataacattcagattcagtataaaatgataacatgttgatgtgtataggatgt--ttaa--- |
150 |
Q |
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| T |
7687465 |
aatgccacatttttctatgactgtatagatagtaatatgataacattcaagttaaatataaaatggtaacaaaatgatgtgtataggatgtgtttaattt |
7687366 |
T |
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| Q |
151 |
-agggttgatgcacttaaacctgaattgtttaagacgaagtccttgtttcttcctttcttatagttcaatattgataatttttagtgtttataaatattc |
249 |
Q |
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| T |
7687365 |
gagggtttatggacttaaacctgaattgtttaagagacagtctatgtttctaccttccttatagttcaatattgataatttatagagttcttaaa-gtta |
7687267 |
T |
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| Q |
250 |
tgttgatgggatatttgggtttaacttttatgcttatcacaa |
291 |
Q |
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| T |
7687266 |
tgttgatggaatattgtggtttaaattttatgcttatcacaa |
7687225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 7686108 - 7686049
Alignment:
| Q |
295 |
ataatttcttaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
354 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||||||| |
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| T |
7686108 |
ataatttcttaatattgcatttgaatttattttgattgtagatcgtgaaggagccctttg |
7686049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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