View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21197_low_35 (Length: 359)

Name: NF21197_low_35
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21197_low_35
NF21197_low_35
[»] chr1 (2 HSPs)
chr1 (65-346)||(3808207-3808488)
chr1 (33-68)||(3808048-3808083)
[»] chr5 (1 HSPs)
chr5 (201-345)||(29838248-29838391)
[»] chr3 (7 HSPs)
chr3 (202-341)||(224853-224991)
chr3 (211-344)||(197105-197237)
chr3 (217-344)||(204956-205082)
chr3 (200-322)||(221917-222038)
chr3 (200-322)||(216972-217093)
chr3 (214-301)||(210383-210470)
chr3 (223-322)||(198274-198372)
[»] chr4 (1 HSPs)
chr4 (217-344)||(6903411-6903537)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 65 - 346
Target Start/End: Original strand, 3808207 - 3808488
Alignment:
Q  65 gaaagagagatcaattaaagtggcaacataaacatttactttaaaccaaaaattctaaagtataatcctcaccgtacgatttgccttagcaatttttaga 164  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  3808207 gaaagagagatcaatttaagtagcaacataaacatttactttaaaccaaaaactccaaagtataatcctcaccgtacgatttgccttagcaatttttaga 3808306  T
Q  165 agcatgtttaaacatgcttttgtcctctttcccatgactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatccca 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3808307 agcatgtttaaacatgcttttgtcctctttcccatgactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatccca 3808406  T
Q  265 acagaagttacgtcaaatataataacactaaactttggaatttccttcataattgaaagaaaggtaccaaccatatcctatt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3808407 acagaagttacgtcaaatataataacactaaactttggaatttccttcataattgaaagaaaggtaccaaccatatcctatt 3808488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 3808048 - 3808083
Alignment:
Q  33 atacatttgttaaacaagataatcaaccacacgaaa 68  Q
    ||||||||||||||||||||||||||||||||||||    
T  3808048 atacatttgttaaacaagataatcaaccacacgaaa 3808083  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 29838248 - 29838391
Alignment:
Q  201 actaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaacttt 300  Q
    ||||||||| ||||| |||||||||| ||||||||||||||||| ||| |||||| ||||  ||||||||||| | ||||||||||||||||||||||||    
T  29838248 actaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataataacactaaacttt 29838347  T
Q  301 ggaatttccttcataattgaaagaaaggtaccaaccatatcctat 345  Q
     ||||| |||||||| |||||||||| | | ||||||||||||||    
T  29838348 -gaattcccttcatatttgaaagaaatgaagcaaccatatcctat 29838391  T

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Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 202 - 341
Target Start/End: Original strand, 224853 - 224991
Alignment:
Q  202 ctaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttg 301  Q
    |||||| ||| |||||||| ||||| ||||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||||||||||||||||||     
T  224853 ctaggacactctgtgtttgtttctccattagtacttggagttttgagtggatagcaaatctcaacagaagttacatcaaatataataacactaaacttt- 224951  T
Q  302 gaatttccttcataattgaaagaaaggtaccaaccatatc 341  Q
    ||||| |||||||| |||||||| | | | ||||||||||    
T  224952 gaattcccttcatatttgaaagacatgaagcaaccatatc 224991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 344
Target Start/End: Original strand, 197105 - 197237
Alignment:
Q  211 tttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttcct 310  Q
    |||||||||||||||| ||||  |||||||||||| || ||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||    
T  197105 tttgtgtttggttctccattaacacttggagtttttaatggataacaaatctcaacataagttacgtcaaatataataacactaaacttt-gaattccct 197203  T
Q  311 tcataattgaaagaaaggtaccaaccatatccta 344  Q
    || || |||||||| ||||| |||||||| ||||    
T  197204 tcgtatttgaaagataggtagcaaccatacccta 197237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 217 - 344
Target Start/End: Complemental strand, 205082 - 204956
Alignment:
Q  217 tttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttccttcataa 316  Q
    |||| ||||| ||||||||| ||||||||||  |||||||||||| |||| |||||||| |||||||||| ||||||||||||| ||||||||||| ||     
T  205082 tttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttacatcaaatataacaacactaaacttt-gaatttccttcgtat 204984  T
Q  317 ttgaaagaaaggtaccaaccatatccta 344  Q
    |||||||| ||||| |||||| ||||||    
T  204983 ttgaaagataggtagcaaccacatccta 204956  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 322
Target Start/End: Original strand, 221917 - 222038
Alignment:
Q  200 gactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactt 299  Q
    ||||| || |||||||||||| ||||| |||| ||||| |||||||||| |||||||||||| ||||||||||||| |||||||||| |||| |||||||    
T  221917 gactatgacactttgtgtttgtttctccattaatactttgagttttgaatggatagcaaatctcaacagaagttacatcaaatataacaacattaaactt 222016  T
Q  300 tggaatttccttcataattgaaa 322  Q
    | ||||  |||||||| ||||||    
T  222017 t-gaatccccttcatatttgaaa 222038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 200 - 322
Target Start/End: Original strand, 216972 - 217093
Alignment:
Q  200 gactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactt 299  Q
    ||||| || ||||||| |||| ||||| ||| |||||| |||||||||| |||||||||||| ||| ||||||| | ||||||||||  |||||||||||    
T  216972 gactatgaaactttgtttttgtttctccatttgtactttgagttttgaatggatagcaaatctcaatagaagttgcatcaaatataaagacactaaactt 217071  T
Q  300 tggaatttccttcataattgaaa 322  Q
    | ||||  |||||||| ||||||    
T  217072 t-gaatccccttcatatttgaaa 217093  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 210383 - 210470
Alignment:
Q  214 gtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttg 301  Q
    ||||||| ||||| | |||||||||||||||| || |||||||||||  ||||||||||| | |||||||||||||| ||||| ||||    
T  210383 gtgtttgtttctccactagtacttggagtttttaatggatagcaaatttcaacagaagttgcatcaaatataataacgctaaaatttg 210470  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 322
Target Start/End: Original strand, 198274 - 198372
Alignment:
Q  223 tctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttccttcataattgaaa 322  Q
    |||| ||||||||||||||||||||| | |||  ||||| |||||||||||   ||| |||||| |||| |||||||| ||||| |||| ||| ||||||    
T  198274 tctccattagtacttggagttttgaatgaataagaaatctcaacagaagttgtatcatatataacaacattaaacttt-gaattcccttgatagttgaaa 198372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 217 - 344
Target Start/End: Original strand, 6903411 - 6903537
Alignment:
Q  217 tttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttccttcataa 316  Q
    |||| ||||| ||||||||| ||||||||||  |||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||| ||     
T  6903411 tttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttacatcaaatataataacactaaacttt-gaatttccttcgtat 6903509  T
Q  317 ttgaaagaaaggtaccaaccatatccta 344  Q
    |||||||| ||||| |||||||||||||    
T  6903510 ttgaaagataggtagcaaccatatccta 6903537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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