View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_37 (Length: 351)
Name: NF21197_low_37
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 44 - 291
Target Start/End: Complemental strand, 7408978 - 7408728
Alignment:
| Q |
44 |
tggtagtttgaatgcataggaaatattgaatgcttttgccatttatattatgattgaatggaacagctatgattgacaacatgctagtgtatagcttcta |
143 |
Q |
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| T |
7408978 |
tggtagtttgtatgcacatgaaatattgaatgcttcttctatttatattatgattgaatggatcagctatgcttgacaacatgctagtgtatagcttcta |
7408879 |
T |
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| Q |
144 |
aagcacatataacctttcaagatattcgatgtgtggggtgaaattattt---agaaataaatag-catggttaagacttcaaagtttcnnnnnnnctttc |
239 |
Q |
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| T |
7408878 |
aagctcagatatcctttcaagatattcgatgtgtggggtgaaattatttgaaataattaaatagccatggttaagacttcagagctt-ttcttttctttc |
7408780 |
T |
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| Q |
240 |
aaaaatttgtggattttaacataggatttgggtgtctcaatattcataggat |
291 |
Q |
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| T |
7408779 |
aaaaatctgttgattttatgataggatttgggtgtatcaatattcaaaggat |
7408728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7409088 - 7409049
Alignment:
| Q |
1 |
aaggaaggctacaaatagaagaagggatagttcaagtata |
40 |
Q |
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| T |
7409088 |
aaggaaggctacaaatagaagaagggatagttcaagtata |
7409049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 7422843 - 7422808
Alignment:
| Q |
3 |
ggaaggctacaaatagaagaagggatagttcaagta |
38 |
Q |
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| T |
7422843 |
ggaaggctacaaatagaagaagggatagttcaagta |
7422808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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