View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_38 (Length: 345)
Name: NF21197_low_38
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 4870602 - 4870284
Alignment:
| Q |
9 |
ttattgttgatgggtttcggtgtgtgtcattccagttccagaccatccaaacaaatgttttaaaattagtaacataataaacatctctataaatttaata |
108 |
Q |
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| T |
4870602 |
ttattgttgatgggtttcggtgtgtgtcattccagttccagaccatccaaacaaatgttttaaaattagtaacataataaacatctctataaatttaata |
4870503 |
T |
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| Q |
109 |
tcaaaatattggaatacttacttatttacgattgaataagtcgatgttatcttatgggagtgttgcacaacattgaagaccacacccgtgattgttgaag |
208 |
Q |
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| T |
4870502 |
tcaatatattggaatacttccttatttacgattgaataagtcgatgttatcttatgggagtgttgcacaacattgaagaccacacccatgattgttgaag |
4870403 |
T |
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| Q |
209 |
tagagtata---tattttgcattggaagatatatatgataggcttatttataattttattaatattggaagatatttttccgtaagctaatttactaatt |
305 |
Q |
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| T |
4870402 |
tagagtatatactattttgcattggaagatatatatgataggcttatttataattttattaatattggaagatatttttccgtaagctaatttagtaatt |
4870303 |
T |
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| Q |
306 |
taaaagtgagagtcatcac |
324 |
Q |
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| T |
4870302 |
taaaagtgagagtcatcac |
4870284 |
T |
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