View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21197_low_4 (Length: 783)

Name: NF21197_low_4
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21197_low_4
NF21197_low_4
[»] chr7 (9 HSPs)
chr7 (219-768)||(32909955-32910500)
chr7 (219-449)||(32932122-32932352)
chr7 (12-158)||(32910578-32910724)
chr7 (219-364)||(32921744-32921889)
chr7 (219-418)||(32940381-32940580)
chr7 (220-321)||(32897449-32897550)
chr7 (518-626)||(32931978-32932086)
chr7 (43-124)||(32910612-32910693)
chr7 (43-118)||(35880145-35880219)
[»] chr4 (2 HSPs)
chr4 (219-364)||(11822264-11822409)
chr4 (66-122)||(45121171-45121227)
[»] chr2 (4 HSPs)
chr2 (66-124)||(4931585-4931643)
chr2 (43-101)||(4931585-4931643)
chr2 (59-121)||(37300003-37300065)
chr2 (59-109)||(4980336-4980386)
[»] chr8 (1 HSPs)
chr8 (44-124)||(26901484-26901564)
[»] scaffold0024 (2 HSPs)
scaffold0024 (59-107)||(132627-132675)
scaffold0024 (65-120)||(142177-142232)
[»] chr6 (2 HSPs)
chr6 (43-126)||(2511405-2511488)
chr6 (43-124)||(2511407-2511488)
[»] chr5 (3 HSPs)
chr5 (31-109)||(6965315-6965394)
chr5 (61-124)||(29919368-29919431)
chr5 (44-122)||(8610329-8610407)
[»] chr1 (1 HSPs)
chr1 (59-108)||(46170410-46170459)


Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 219 - 768
Target Start/End: Complemental strand, 32910500 - 32909955
Alignment:
Q  219 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32910500 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatggtaaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 32910401  T
Q  319 gaggaaattgtttcttgttgttggaaaatctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggcattaacaagagtagaa 418  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32910400 gaggaaattgtttcttgtttttggaaaatctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggcattaacaagagtagaa 32910301  T
Q  419 cagtggtgattagtgtaattaggaactccataatcttaattttttggactgagcaaaataattctgaaattggtcacaggttaattaaccagcttaatta 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32910300 cagtggtgattagtgtaattaggaactccataatcttaattttttggactgagcaaaataattctgaaattggtcacaggttaattaaccagcttaatca 32910201  T
Q  519 tgtgtttgtcataattcacaacccactatgtataactggaaaaagtgaagatcaattaattatttaaaagacacgattaactggcgttttctttctctta 618  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32910200 tgtgtttgtcataattcacaacccactatgtataactggaaaaggtgaagatcaattaattatttaaaagacacgattaacttgcgttttctttctctta 32910101  T
Q  619 aattatgttatatgccgctgttaaaggtggactaattaatgacattgtggcatgggtgctctaattattatactacttagtatcttaatcttgatcgaat 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||||    
T  32910100 aattatgttatatgccgctgttaaaggtggactaattaatgacattgtggcattggtgctctaattattatac----tagtatcttaatcttgatcgaat 32910005  T
Q  719 caacacgttgtttaaatgtggcacaatatatggcaaggacacaaaatatt 768  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32910004 caacacattgtttaaatgtggcacaatatatggcaaggacacaaaatatt 32909955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 219 - 449
Target Start/End: Complemental strand, 32932352 - 32932122
Alignment:
Q  219 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 318  Q
    ||||| ||| |||||||| |||||||||||||||||||| |||||||| |||||||| | |||  |||||||||||||||||||||| | |||||| |||    
T  32932352 ctcaatatcattgccaatgtgaagaagatctaagttctggtcaaaatggtaaacatggacacgagtaccagtgctaccagcatcaaatatgacagcgtaa 32932253  T
Q  319 gaggaaattgtttcttgttgttggaaaatctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggcattaacaagagtagaa 418  Q
    || |  |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  32932252 gatgttaaggtttcttgtttttggaaaatctttcgattagtgagtaggttgtttcctaaatattgggaggaagtgattgcaggcattaacaagagtaaaa 32932153  T
Q  419 cagtggtgattagtgtaattaggaactccat 449  Q
     |||||| || ||||||||||||||||||||    
T  32932152 aagtggtaatgagtgtaattaggaactccat 32932122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 32910724 - 32910578
Alignment:
Q  12 atgaatacatttacatatatatactccctccatcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgactttttta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  32910724 atgaatacatttacatatatatactccctccatcttaaatataatcaaaaagtcaaatatatttgatttaaatttggaccaaatacatttgactttttta 32910625  T
Q  112 ttatatttaagattgcagggagtaacttcatagtaatcaagaagaac 158  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||    
T  32910624 ttatatttaagatcgtagggagtaacttcatagtaatcaagaagaac 32910578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 219 - 364
Target Start/End: Complemental strand, 32921889 - 32921744
Alignment:
Q  219 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 318  Q
    |||||||||||| |||| ||||||||||| |||||| ||||||||||| |||||||| | |||||| ||||||||||||||||||||||| |||||||||    
T  32921889 ctcaacatctttaccaacatgaagaagatttaagttttgatcaaaatggtaaacatggacacggcttccagtgctaccagcatcaaacacaacagcataa 32921790  T
Q  319 gaggaaattgtttcttgttgttggaaaatctttcgattagtgagta 364  Q
    |||||||||| |||||||| | |||||||||| || ||||||||||    
T  32921789 gaggaaattggttcttgttttgggaaaatcttacggttagtgagta 32921744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 219 - 418
Target Start/End: Complemental strand, 32940580 - 32940381
Alignment:
Q  219 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 318  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||||| |||||||| ||     
T  32940580 ctcaacatcgttgccaatgtgaagaagatctaagttctgatcaaaatggtagacatgaacacggctaccggtgctaccagcatcaaagacgacagcgtac 32940481  T
Q  319 gaggaaattgtttcttgttgttggaaa-atctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggcattaacaagagtaga 417  Q
    ||||  |  |||||||||| ||||||| || || ||||| |||||||  |||||||| | |||||| ||||||| ||||| |||||| || |||||||||    
T  32940480 gaggttagagtttcttgtt-ttggaaatattttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggcatcaagaagagtaga 32940382  T

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Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 220 - 321
Target Start/End: Complemental strand, 32897550 - 32897449
Alignment:
Q  220 tcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataag 319  Q
    |||| |||||||||||| |||| ||||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |  ||||||||||    
T  32897550 tcaagatctttgccaatgtgaacaagatctaaattctgatcaaaatgaaaaacatgaacacggctaccagagctaccagcatcaaaaataacagcataag 32897451  T
Q  320 ag 321  Q
    ||    
T  32897450 ag 32897449  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 518 - 626
Target Start/End: Complemental strand, 32932086 - 32931978
Alignment:
Q  518 atgtgtttgtcataattcacaacccactatgtataactggaaaaagtgaagatcaattaattatttaaaagacacgattaactggcgttttctttctctt 617  Q
    ||||||| || || |||||||| ||||||||||||| |||||||||||||||| || |||| |||||| | ||  ||||| || | ||||||||||||||    
T  32932086 atgtgttggttatgattcacaatccactatgtataaatggaaaaagtgaagatgaaataataatttaagaaacgtgattatctcgtgttttctttctctt 32931987  T
Q  618 aaattatgt 626  Q
    |||||||||    
T  32931986 aaattatgt 32931978  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 32910612 - 32910693
Alignment:
Q  43 atcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagat 124  Q
    ||||||||||||||  |||||||||||||||||| |  |||||| || || ||| |||||||||||| ||||||||||||||    
T  32910612 atcttaaatataataaaaaagtcaaatgtatttggtccaaatttaaatcaaatatatttgactttttgattatatttaagat 32910693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 35880145 - 35880219
Alignment:
Q  43 atcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatt 118  Q
    ||||||||||||| | |||||||||||   ||||||||||||||| |||| ||| |||||| |||||| |||||||    
T  35880145 atcttaaatataaacaaaaagtcaaatacgtttgatttaaatttggaccaaatatatttga-ttttttcttatatt 35880219  T

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Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 219 - 364
Target Start/End: Complemental strand, 11822409 - 11822264
Alignment:
Q  219 ctcaacatctttgccaatatgaagaagatctaagttctgatcaaaatgataaacatgaatacggctaccagtgctaccagcatcaaacacgacagcataa 318  Q
    |||||||||||| |||| ||||||||||| |||||| ||||||||||| |||||||| | |||||| ||||||||||||||||||||||| ||||| |||    
T  11822409 ctcaacatctttaccaacatgaagaagatttaagttttgatcaaaatggtaaacatggacacggcttccagtgctaccagcatcaaacacaacagcgtaa 11822310  T
Q  319 gaggaaattgtttcttgttgttggaaaatctttcgattagtgagta 364  Q
    ||||||||||||||||||| | |||||||||| || ||||||||||    
T  11822309 gaggaaattgtttcttgttttgggaaaatcttacggttagtgagta 11822264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 45121171 - 45121227
Alignment:
Q  66 aaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaag 122  Q
    |||||||||||||||||||||| || | ||||||||||||||||  |||||||||||    
T  45121171 aaatgtatttgatttaaatttggactaaatacatttgactttttgtttatatttaag 45121227  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 4931585 - 4931643
Alignment:
Q  66 aaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagat 124  Q
    |||||||||||||||||||||||| || ||||||||||||||||  |||||||||||||    
T  4931585 aaatgtatttgatttaaatttgaatcaaatacatttgactttttgtttatatttaagat 4931643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 4931643 - 4931585
Alignment:
Q  43 atcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacattt 101  Q
    ||||||||||||| | ||||||||||||||||||||| |||||| || || ||||||||    
T  4931643 atcttaaatataaacaaaaagtcaaatgtatttgattcaaatttaaatcaaatacattt 4931585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 37300003 - 37300065
Alignment:
Q  59 aaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaa 121  Q
    ||||||| |||||||||  || |||||||||||| ||||||||||||||||  ||||||||||    
T  37300003 aaaagtcgaatgtatttagttgaaatttgaaccaaatacatttgactttttatttatatttaa 37300065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 4980386 - 4980336
Alignment:
Q  59 aaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttt 109  Q
    |||| |||| |||||||||| ||||||||| | ||||||||||||||||||    
T  4980386 aaaaatcaattgtatttgatctaaatttgagctatatacatttgacttttt 4980336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 26901484 - 26901564
Alignment:
Q  44 tcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagat 124  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| | |||||||| ||||| |   ||||||||||||    
T  26901484 tcttaaatatatacaaaaagtcaaatgtatttgatttaaatttgaacaaaatacatttaactttgtgcatatatttaagat 26901564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 132675 - 132627
Alignment:
Q  59 aaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttt 107  Q
    |||||||||||||||||| |||||| ||| |||| ||||||||||||||    
T  132675 aaaagtcaaatgtatttggtttaaagttggaccaaatacatttgacttt 132627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 142177 - 142232
Alignment:
Q  65 caaatgtatttgatttaaatttgaaccatatacatttgacttttttattatattta 120  Q
    ||||||||||||||| |||||| ||||| |||||||||||| |||| || ||||||    
T  142177 caaatgtatttgattcaaatttaaaccaaatacatttgactctttttttttattta 142232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 2511488 - 2511405
Alignment:
Q  43 atcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagattg 126  Q
    ||||||||| ||| | |||||||||||||||||||| ||||||| ||  | | ||||||||| ||||   ||||||||||||||    
T  2511488 atcttaaatctaaacaaaaagtcaaatgtatttgatctaaatttaaataaaaaacatttgaccttttgtatatatttaagattg 2511405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 2511407 - 2511488
Alignment:
Q  43 atcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagat 124  Q
    ||||||||||||  | ||| ||||||||| ||| ||||||||||  | || ||||||||||||||||  ||| |||||||||    
T  2511407 atcttaaatatatacaaaaggtcaaatgttttttatttaaatttagatcaaatacatttgactttttgtttagatttaagat 2511488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 6965315 - 6965394
Alignment:
Q  31 tatactccctcca-tcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttt 109  Q
    ||||||||||| | ||||| || ||| | ||||||||||||||||| ||| ||||||| |||| |||||||||| |||||    
T  6965315 tatactccctcgagtcttatatttaagcaaaaagtcaaatgtatttaattcaaatttggaccaaatacatttgatttttt 6965394  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 29919368 - 29919431
Alignment:
Q  61 aagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaagat 124  Q
    |||||||||||||||| | ||||| ||||||| |||||||| |||||||  ||| |||||||||    
T  29919368 aagtcaaatgtatttgttctaaatatgaaccaaatacattttactttttacttaaatttaagat 29919431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 8610329 - 8610407
Alignment:
Q  44 tcttaaatataatcgaaaagtcaaatgtatttgatttaaatttgaaccatatacatttgacttttttattatatttaag 122  Q
    |||||||||||  | |||||||||||| |||| || |||||||  |||| ||||||||| ||||||  |||||||||||    
T  8610329 tcttaaatatacacaaaaagtcaaatggatttaatctaaatttataccaaatacatttgtctttttgcttatatttaag 8610407  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 46170410 - 46170459
Alignment:
Q  59 aaaagtcaaatgtatttgatttaaatttgaaccatatacatttgactttt 108  Q
    ||||||||||||||||| || |||||||| |||| |||||||| ||||||    
T  46170410 aaaagtcaaatgtatttaatctaaatttggaccaaatacattttactttt 46170459  T

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