View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_48 (Length: 271)
Name: NF21197_low_48
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_48 |
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| [»] scaffold0077 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 22377510 - 22377245
Alignment:
| Q |
1 |
aagaaaaagaaaactgcaggtacgtttaaaccttgaaataattgcaacttacaaccatcctttgttccttcctcaacnnnnnnnnnnnnnnnctatcatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22377510 |
aagaaaaagaaaactgcaggtacgtttaaaccttgaaataattgcaacttacaaccatcctttgttccttcctcaacaaaaaacaaaa----ctatcatt |
22377415 |
T |
|
| Q |
101 |
tattccaaaacaaaaatcaaacgaaattaaaggaaccaa-------------ccactatccttttatgatgtcttttttcatcatcctcaagaacgtgta |
187 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22377414 |
tattctaaaacaaaaatcaaacgaaattaaaggaaccaaatccattgaacaaccactatccttttatgatgtcttttttcatcatcctcaagaacgtgta |
22377315 |
T |
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| Q |
188 |
attggttcccaannnnnnngtttatgcatatgagtgtatttgagatcagtgcaaccatacctttcctttg |
257 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22377314 |
attggttcccaatttttttgtttatgcatatgagtgtatttgagatcagtgcaaccatacctttcctttg |
22377245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 9368331 - 9368600
Alignment:
| Q |
1 |
aagaaaaagaaaactgcaggtacgtttaaaccttgaaataattgcaacttacaaccatcctttgttccttcctcaacnnnnnnnnnnnnnnnctatcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
9368331 |
aagaaaaagaaaactgcaggtacgtttaaaccttgaaacaattgcaacttacaaccatcctttattccttcctcaacaaaaaaaaaaaaaaactatcatt |
9368430 |
T |
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| Q |
101 |
tattccaaaacaaaaatcaaacgaaattaaaggaaccaa-------------ccactatccttttatgatgtcttttttcatcatcctcaagaacgtgta |
187 |
Q |
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| T |
9368431 |
tattccaaaacaaaaatcaaacgaaattaaaagaaccaaacccattgaacaaccactatccttttatgatgtcttttttcatcatcctctagaacgtgta |
9368530 |
T |
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| Q |
188 |
attggttcccaannnnnnngtttatgcatatgagtgtatttgagatcagtgcaaccatacctttcctttg |
257 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9368531 |
attggttcccaatttttttgtttatgcatatgagtgtatttgagatcagtgcaaccatacctttcctttg |
9368600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 50798 - 50675
Alignment:
| Q |
1 |
aagaaaaagaaaactgcaggtacgtttaaaccttgaaataattgcaacttacaaccatcctttgttccttcctcaacnnnnnnnnnnnnnnnctatcatt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||| |||| |||||||| |
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| T |
50798 |
aagaaaaagaaaactgcaggta-gtttaaaccttgaaacaattgcaacttacaaccatcatttgtttcttccacaac-------agaaaaaactatcatt |
50707 |
T |
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| Q |
101 |
tattccaaaacaaaaatcaaacgaaattaaag |
132 |
Q |
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| T |
50706 |
tattccaaaacaaaaatcaaacgaaattaaag |
50675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 60546 - 60423
Alignment:
| Q |
1 |
aagaaaaagaaaactgcaggtacgtttaaaccttgaaataattgcaacttacaaccatcctttgttccttcctcaacnnnnnnnnnnnnnnnctatcatt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||||| |||| |||||||| |
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| T |
60546 |
aagaaaaagaaaactgcaggta-gtttaaaccttgaaacaattgcaacttacaaccatcatttgtttcttccacaac-------agaaaaaactatcatt |
60455 |
T |
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| Q |
101 |
tattccaaaacaaaaatcaaacgaaattaaag |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
60454 |
tattccaaaacaaaaatcaaacgaaattaaag |
60423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 122
Target Start/End: Original strand, 41929761 - 41929790
Alignment:
| Q |
93 |
ctatcatttattccaaaacaaaaatcaaac |
122 |
Q |
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| T |
41929761 |
ctatcatttattccaaaacaaaaatcaaac |
41929790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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