View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_49 (Length: 270)
Name: NF21197_low_49
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_49 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 43657399 - 43657658
Alignment:
| Q |
12 |
tgagaagaatagttaaagcgtcagaagagatgggaagaagttgggaag-aagtgcttttgtttgtagccccaaagatgaagtagaagaaacctctgttgg |
110 |
Q |
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| T |
43657399 |
tgagtagaatagttaaagcgtcagaagagatgggaagaagttggtcatcaagtgcttttgtttgtagccccaaagatgaagtagaagaaacctctgtagg |
43657498 |
T |
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| Q |
111 |
tcgcttcttctcatgtggctttggggtgaaggagaggttttggaatagacaacaaaacacaaagaaatccgttgaagtaaagtccgaaatttttcttctt |
210 |
Q |
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| T |
43657499 |
tcgcttcttctcatgtggctttggggtgaaggagaggttttggaatagacaacaaaacacagagaaatccattgaagtaaagtccgaaatctttcttctt |
43657598 |
T |
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| Q |
211 |
cccaatgatattcttgaaatgtgtttggatcgtgttccattcgaaagtctcgataatgct |
270 |
Q |
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| T |
43657599 |
cccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgct |
43657658 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 10367339 - 10367433
Alignment:
| Q |
167 |
acacaaagaaatccgttgaagtaaagtccgaaatttttcttcttcccaatgatattcttgaaatgtgtttggatcgtgttccattcgaaagtctc |
261 |
Q |
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| T |
10367339 |
acacaaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctc |
10367433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 10378878 - 10378958
Alignment:
| Q |
181 |
gttgaagtaaagtccgaaatttttcttcttcccaatgatattcttgaaatgtgtttggatcgtgttccattcgaaagtctc |
261 |
Q |
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| T |
10378878 |
gttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctc |
10378958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 10367262 - 10367314
Alignment:
| Q |
126 |
tggctttggggtgaaggagaggttttggaatagacaacaaaacacaaagaaat |
178 |
Q |
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| T |
10367262 |
tggcttcggggtgaaggagtggttttggaagaggcaacacaacccaaagaaat |
10367314 |
T |
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