View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21197_low_5 (Length: 622)

Name: NF21197_low_5
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21197_low_5
NF21197_low_5
[»] chr1 (9 HSPs)
chr1 (19-371)||(4160616-4160970)
chr1 (395-616)||(4160377-4160598)
chr1 (490-616)||(28496106-28496232)
chr1 (489-616)||(12774937-12775064)
chr1 (490-616)||(12804511-12804637)
chr1 (490-616)||(36989340-36989466)
chr1 (489-616)||(42287117-42287244)
chr1 (489-616)||(50788818-50788945)
chr1 (60-102)||(50786107-50786149)
[»] chr8 (2 HSPs)
chr8 (489-616)||(5788722-5788849)
chr8 (504-616)||(33186735-33186847)
[»] chr4 (2 HSPs)
chr4 (489-616)||(30518147-30518274)
chr4 (508-616)||(22085524-22085632)
[»] chr2 (4 HSPs)
chr2 (490-616)||(40040789-40040915)
chr2 (490-616)||(42898298-42898424)
chr2 (488-616)||(38895855-38895983)
chr2 (60-94)||(42898918-42898952)
[»] chr7 (1 HSPs)
chr7 (489-614)||(40749392-40749517)
[»] chr5 (1 HSPs)
chr5 (553-617)||(1983175-1983239)


Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 4160970 - 4160616
Alignment:
Q  19 ggttcactgctgaaattgatgcactctcttgtgataaaacgtcacagaaggctctgtgagtgatgaaactgtcccttctgcaatcaaaaataaatttaaa 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160970 ggttcactgctgaaattgatgcactctcctgtgataaaacgtcacagaaggctctgtgagtgatgaaactgtcccttctgcaatcaaaaataaatttaaa 4160871  T
Q  119 gtatatacatcatattattatttaattaatctcaaatatttattgaaaaaatacatgcattatagtttgttacctgtaacgtacacatcaaacacaatat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160870 gtatatacatcatattattatttaattaatctcaaatatttattgaaaaaatacatgcattatagtttgttacctgtaacgtacacatcaaacacaatat 4160771  T
Q  219 atgcattatatttgaattcgagtactctc---aaactattcatcttagtttggataatgaaagattaccatatggacagttttgaatattgatttgtatg 315  Q
    |||||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4160770 atgcattatatttgaattcgagtactctcaataaactattcatcttggtttggataatgaaagattaccatatggaccgttttgaatattgatttgtatg 4160671  T
Q  316 tcacattctatgaactaaaaatactgtttaagcacacttttttacctttttacgta 371  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4160670 tcacattctatgaactaaaaatactgtttaagcacac-tttttacctttttacgta 4160616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 395 - 616
Target Start/End: Complemental strand, 4160598 - 4160377
Alignment:
Q  395 ttttggattttttgactcattattattattattgaacgtaccatgatttagtttgtttgtatctataatgaccaaatttaaattaataagattcttacct 494  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160598 ttttggaatttttgactcattattattattattgaacgtaccatgatttagtttgtttgtatctataatgaccaaatttaaattaataagattcttacct 4160499  T
Q  495 tgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttc 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160498 tgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttc 4160399  T
Q  595 tcacacttccacttcttctcac 616  Q
    ||||||||||||||||||||||    
T  4160398 tcacacttccacttcttctcac 4160377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 490 - 616
Target Start/End: Original strand, 28496106 - 28496232
Alignment:
Q  490 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 589  Q
    ||||||||||||||||| ||||||||||| || || ||| | || |||||  |||| | ||||||||||||||| || || |||||||||  ||| ||||    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  590 atttctcacacttccacttcttctcac 616  Q
    |||| ||||| ||||||||||||||||    
T  28496206 atttttcacatttccacttcttctcac 28496232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 489 - 616
Target Start/End: Complemental strand, 12775064 - 12774937
Alignment:
Q  489 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 588  Q
    |||||| |||||||| || |||||||||||  ||||||| ||||| |||||| |||| ||||||||||||||||| || ||||| |||||    ||||||    
T  12775064 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaa 12774965  T
Q  589 catttctcacacttccacttcttctcac 616  Q
    || || ||||||||||| || |||||||    
T  12774964 cacttttcacacttccattttttctcac 12774937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 616
Target Start/End: Original strand, 12804511 - 12804637
Alignment:
Q  490 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 589  Q
    |||||||||||||| || |||||||||||  |||||||  |||| |||||| | || ||||||||||||||||| || ||||| ||||||   |||||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  590 atttctcacacttccacttcttctcac 616  Q
    | || ||||| |||||||| |||||||    
T  12804611 acttttcacatttccactttttctcac 12804637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 616
Target Start/End: Complemental strand, 36989466 - 36989340
Alignment:
Q  490 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 589  Q
    ||||| || |||| ||||||||||||||| || || ||  | || ||||| ||||||||||||||||||||||| || ||||| ||||||   |||||||    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  590 atttctcacacttccacttcttctcac 616  Q
    | || ||||| |||||||| |||||||    
T  36989366 acttatcacatttccactttttctcac 36989340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 616
Target Start/End: Complemental strand, 42287244 - 42287117
Alignment:
Q  489 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 588  Q
    |||||| ||||||||||| ||||| |||||  |||| ||| |||| |||||| | || ||||| |||||||| || || ||||| ||||||   || ||     
T  42287244 ttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgag 42287145  T
Q  589 catttctcacacttccacttcttctcac 616  Q
    ||||| ||||| ||||||||||||||||    
T  42287144 catttttcacatttccacttcttctcac 42287117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 616
Target Start/End: Original strand, 50788818 - 50788945
Alignment:
Q  489 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 588  Q
    |||||| |||||||| || |||||||||||| |||| ||| | ||||||||| | || ||||| || |||||||| || ||||| |||||    |||||     
T  50788818 ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagag 50788917  T
Q  589 catttctcacacttccacttcttctcac 616  Q
    || || ||||||||||| ||||||||||    
T  50788918 cacttatcacacttccatttcttctcac 50788945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 50786107 - 50786149
Alignment:
Q  60 tcacagaaggctctgtgagtgatgaaactgtcccttctgcaat 102  Q
    |||||||||||||||||||| ||||||||||| || |||||||    
T  50786107 tcacagaaggctctgtgagttatgaaactgtctctcctgcaat 50786149  T

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Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 489 - 616
Target Start/End: Original strand, 5788722 - 5788849
Alignment:
Q  489 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 588  Q
    ||||||||||||||||||||||||||||||  |||| ||| ||||||||||| |||||||||||||||||||||| || ||||| ||||||   || |||    
T  5788722 ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaa 5788821  T
Q  589 catttctcacacttccacttcttctcac 616  Q
    || || ||||| ||||||||||||||||    
T  5788822 cacttttcacatttccacttcttctcac 5788849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 504 - 616
Target Start/End: Complemental strand, 33186847 - 33186735
Alignment:
Q  504 ggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttctcacacttc 603  Q
    ||||||||| ||||| ||||||||| |||  ||||||| ||| || |||||||||||||| || ||||| ||||||   ||||||||||||||||| |||    
T  33186847 ggttccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttc 33186748  T
Q  604 cacttcttctcac 616  Q
    ||||| |||||||    
T  33186747 cactttttctcac 33186735  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 489 - 616
Target Start/End: Original strand, 30518147 - 30518274
Alignment:
Q  489 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 588  Q
    ||||||||| ||||  |||||||||||||| || || ||| |||| |||||  |||| || |||||||||||||| |||||||| ||||| ||||| ||     
T  30518147 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 30518246  T
Q  589 catttctcacacttccacttcttctcac 616  Q
    || |||||||||||||||||||| ||||    
T  30518247 cacttctcacacttccacttcttttcac 30518274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 508 - 616
Target Start/End: Original strand, 22085524 - 22085632
Alignment:
Q  508 ccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttctcacacttccact 607  Q
    ||||| ||||| || |||||| |||| |||||||| |||  ||||||||||||||| || ||||||||||||   || ||||| || |||||||||||||    
T  22085524 ccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccact 22085623  T
Q  608 tcttctcac 616  Q
    |||||||||    
T  22085624 tcttctcac 22085632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 616
Target Start/End: Complemental strand, 40040915 - 40040789
Alignment:
Q  490 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 589  Q
    ||||| ||||| || || ||||| |||||  | |||||||||||||||||||| ||   |||||| |||||||| || ||||||||||||   |||||||    
T  40040915 tacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttagaac 40040816  T
Q  590 atttctcacacttccacttcttctcac 616  Q
    | || ||||||||||||||||||||||    
T  40040815 acttatcacacttccacttcttctcac 40040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 616
Target Start/End: Complemental strand, 42898424 - 42898298
Alignment:
Q  490 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 589  Q
    |||||||||||||||||||||||||||||  | || ||| | ||||||||  ||||||| ||||||||||| || || |||||||||||    ||||| |    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  590 atttctcacacttccacttcttctcac 616  Q
    | || ||||| ||||||||||||||||    
T  42898324 acttgtcacatttccacttcttctcac 42898298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 616
Target Start/End: Original strand, 38895855 - 38895983
Alignment:
Q  488 cttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttaga 587  Q
    |||||||||| ||||  || ||||| ||||| || || ||| |||| |||||| | || || || |||||||||||||| ||||| |||||   ||| ||    
T  38895855 cttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttga 38895954  T
Q  588 acatttctcacacttccacttcttctcac 616  Q
     || |||||||||||||||||||||||||    
T  38895955 gcacttctcacacttccacttcttctcac 38895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 42898952 - 42898918
Alignment:
Q  60 tcacagaaggctctgtgagtgatgaaactgtccct 94  Q
    |||||||||||||||||||| ||||||||||||||    
T  42898952 tcacagaaggctctgtgagttatgaaactgtccct 42898918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 489 - 614
Target Start/End: Complemental strand, 40749517 - 40749392
Alignment:
Q  489 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 588  Q
    ||||||||||||||| || ||||| ||||||||||| ||| |||| |||||| |||| |  |||||||||||||| || || |||||||||   || |||    
T  40749517 ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaa 40749418  T
Q  589 catttctcacacttccacttcttctc 614  Q
    || || ||||||||||| ||||||||    
T  40749417 cacttatcacacttccatttcttctc 40749392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 553 - 617
Target Start/End: Complemental strand, 1983239 - 1983175
Alignment:
Q  553 gctttccaatccgactgaactgcatatcgtttagaacatttctcacacttccacttcttctcact 617  Q
    |||||||||||||| |||||  ||||   ||| || || ||||||||||||||||||||||||||    
T  1983239 gctttccaatccgattgaacaacataaaattttgagcacttctcacacttccacttcttctcact 1983175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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