View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_52 (Length: 267)
Name: NF21197_low_52
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 13076447 - 13076326
Alignment:
| Q |
17 |
caaagggcgaaattggtaagccaccaaaaaatcaaactccatctccaaaagaaccatttcagtccacagaaggcagtacatcattagaagctgtagcaga |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13076447 |
caaaaggcgaaattggtaagccaccaaaaaatcaaactccatctccaaaagaaccatttcagtccacagaaggcagta---cattagaagctgtagcaga |
13076351 |
T |
|
| Q |
117 |
taaagaggctcaacaatttgaagtt |
141 |
Q |
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||||||||||||||||||||||||| |
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| T |
13076350 |
taaagaggctcaacaatttgaagtt |
13076326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 13065489 - 13065368
Alignment:
| Q |
17 |
caaagggcgaaattggtaagccaccaaaaaatcaaactccatctccaaaagaaccatttcagtccacagaaggcagtacatcattagaagctgtagcaga |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13065489 |
caaaaggcgaaattggtaagccaccaaaaaatcaaactccatctccaaaagaaccatttcagtccacagaaggcagta---cattagaagctgtagcaga |
13065393 |
T |
|
| Q |
117 |
taaagaggctcaacaatttgaagtt |
141 |
Q |
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||||| ||||||||||||||||||| |
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| T |
13065392 |
taaagcggctcaacaatttgaagtt |
13065368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 13072243 - 13072122
Alignment:
| Q |
17 |
caaagggcgaaattggtaagccaccaaaaaatcaaactccatctccaaaagaaccatttcagtccacagaaggcagtacatcattagaagctgtagcaga |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13072243 |
caaaaggcgaaattggtaagccaccaaaaaatcaaactccatctccaaaagaaccatttcagtccacagaaggcagta---cattagaagctgtagcaga |
13072147 |
T |
|
| Q |
117 |
taaagaggctcaacaatttgaagtt |
141 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
13072146 |
taaagcggctcaacaatttgaagtt |
13072122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 13073024 - 13072912
Alignment:
| Q |
29 |
ttggtaagccaccaaaaaatcaaactccatctccaaaagaaccatttcagtccacagaaggcagtacatcattagaagctgtagcagataaagaggctca |
128 |
Q |
| |
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|||||| ||||| | ||||||||| || |||||||||||||||||| | |||| || || |||| | ||||||||| | ||||||||||| || ||| |
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| T |
13073024 |
ttggtatgccacaagaaaatcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcagataaagtggttca |
13072925 |
T |
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| Q |
129 |
acaatttgaagtt |
141 |
Q |
| |
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||||||||||||| |
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| T |
13072924 |
acaatttgaagtt |
13072912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 13077228 - 13077116
Alignment:
| Q |
29 |
ttggtaagccaccaaaaaatcaaactccatctccaaaagaaccatttcagtccacagaaggcagtacatcattagaagctgtagcagataaagaggctca |
128 |
Q |
| |
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|||||| ||||| | ||||||||| || |||||||||||||||||| | |||| || || |||| | ||||||||| | ||||||||||| || ||| |
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| T |
13077228 |
ttggtatgccacaagaaaatcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcagataaagtggttca |
13077129 |
T |
|
| Q |
129 |
acaatttgaagtt |
141 |
Q |
| |
|
||||||||||||| |
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|
| T |
13077128 |
acaatttgaagtt |
13077116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 13065291 - 13065261
Alignment:
| Q |
218 |
aagttgaagaatgcataatcaaagacgagga |
248 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
13065291 |
aagttgaagaatgcataatcaaagacgagga |
13065261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 13072045 - 13072015
Alignment:
| Q |
218 |
aagttgaagaatgcataatcaaagacgagga |
248 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
13072045 |
aagttgaagaatgcataatcaaagacgagga |
13072015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 13076249 - 13076219
Alignment:
| Q |
218 |
aagttgaagaatgcataatcaaagacgagga |
248 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
13076249 |
aagttgaagaatgcataatcaaagacgagga |
13076219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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