View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21197_low_54 (Length: 265)

Name: NF21197_low_54
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21197_low_54
NF21197_low_54
[»] chr2 (4 HSPs)
chr2 (6-252)||(18803539-18803785)
chr2 (177-243)||(42157211-42157277)
chr2 (177-243)||(42167706-42167772)
chr2 (177-242)||(42290147-42290212)
[»] chr4 (7 HSPs)
chr4 (6-250)||(4600733-4600959)
chr4 (6-250)||(4624871-4625107)
chr4 (7-85)||(25039365-25039443)
chr4 (6-85)||(25018254-25018333)
chr4 (173-252)||(25039189-25039268)
chr4 (173-252)||(25018075-25018154)
chr4 (6-63)||(25047277-25047334)
[»] chr6 (1 HSPs)
chr6 (176-242)||(29460418-29460484)
[»] chr5 (1 HSPs)
chr5 (6-59)||(30360262-30360315)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 18803539 - 18803785
Alignment:
Q  6 agatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaagtaatagaaagtgtccaatttagtta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||| |    
T  18803539 agatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaagtaatagaaaaagtttaatttagtga 18803638  T
Q  106 ccacattatagagcttcaactagttgaatcttccatatactaataacaactctaacaaagtaaaaacatgcagaaggaaaacttagtggcggtaaaaaca 205  Q
    |||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18803639 ccacattaaagagcttcaatcagttgaatcttccatatactaataacaactctaacaaagtaaaaacatgcagaaggaaaacttagtggcggtaaaaaca 18803738  T
Q  206 aagaaggaatcagattttacaacaacctgatcaatgaactacttgat 252  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  18803739 aagaaggaatcagattttacaacaacctgatcaatgagctacttgat 18803785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 42157277 - 42157211
Alignment:
Q  177 agaaggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatgaa 243  Q
    |||||||||||||| ||| |||| |||| |||||||| ||| || |||||||||||| |||||||||    
T  42157277 agaaggaaaacttaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatgaa 42157211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 42167772 - 42167706
Alignment:
Q  177 agaaggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatgaa 243  Q
    ||||||||| ||||  || |||| |||| |||||||||||| || |||||||||||| |||||||||    
T  42167772 agaaggaaagcttaagggaggtataaaccaagaaggaatcaaatattacaacaacctcatcaatgaa 42167706  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 42290147 - 42290212
Alignment:
Q  177 agaaggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatga 242  Q
    |||||||||| ||| ||| |||| |||| |||||||| ||| || |||||||||||| ||||||||    
T  42290147 agaaggaaaaattaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatga 42290212  T

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Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 4600959 - 4600733
Alignment:
Q  6 agatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaagtaatagaaagtgtccaatttagtta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |||  |||||||||     
T  4600959 agatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttggccaaggatattgccaagtaatagaaaatgtttaatttagtt- 4600861  T
Q  106 ccacattatagagcttcaactagttgaatcttccatatactaataacaactctaacaaagtaaaaacatgcagaaggaaaacttagtggcggtaaaaaca 205  Q
      ||||   |||| |||       || ||||||||||||| | | |||||||||||       ||| ||||||| |||||||| |||||||||| ||||     
T  4600860 --acatcgaagagtttc-------tgcatcttccatatac-actgacaactctaac-------aaatatgcagatggaaaactaagtggcggtataaacc 4600778  T
Q  206 aagaaggaatcagattttacaacaacctgatcaatgaactacttg 250  Q
    ||||||||||||||||||||||||| |||||  |||| |||||||    
T  4600777 aagaaggaatcagattttacaacaatctgattgatgagctacttg 4600733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 4625107 - 4624871
Alignment:
Q  6 agatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaagtaatagaaagtgtccaatttagtta 105  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||||||| |||||| | |||||| | |||||||||||||| |||  ||||| ||||    
T  4625107 agatgttcaaatcatgaagaatatgaatacagatgcatacagattctccatatcttggccaaggatagttccaagtaatagaaaatgtttaatttggtta 4625008  T
Q  106 ccacattatagagcttcaactagttgaatcttccatatactaataacaactctaacaaagtaaaaacatgcagaaggaaaacttagtggcggtaaaaaca 205  Q
    |  |||||  ||| |||||||||||| || |||||||||| | |||||||||||||       ||| ||||||  |||||| | |||| ||||  ||||     
T  4625007 catcattaatgagtttcaactagttgtattttccatatac-actaacaactctaac-------aaatatgcagctggaaaaataagtgacggtgtaaacc 4624916  T
Q  206 aagaaggaatcagattttacaacaacctgatcaatgaactacttg 250  Q
    ||| |||||||| ||||||||| ||||||||| |||| |||||||    
T  4624915 aagcaggaatcatattttacaagaacctgatctatgagctacttg 4624871  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 25039443 - 25039365
Alignment:
Q  7 gatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaagtaata 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||    
T  25039443 gatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttggccaagaatattgccaagtaata 25039365  T

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Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 25018333 - 25018254
Alignment:
Q  6 agatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaagtaata 85  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||    
T  25018333 agatgtcgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttggccaagaatattgccaagtaata 25018254  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 25039268 - 25039189
Alignment:
Q  173 atgcagaaggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatgaactacttgat 252  Q
    |||||||||||||| | ||||  |||| |||| |||||||||||| || |||||||||||||||||||||||||||||||    
T  25039268 atgcagaaggaaaagtaagtgaaggtataaaccaagaaggaatcaaatattacaacaacctgatcaatgaactacttgat 25039189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 25018154 - 25018075
Alignment:
Q  173 atgcagaaggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatgaactacttgat 252  Q
    |||||||||||||| | ||||  |||| |||  |||||||||||| || ||||||||| ||||||||||| |||||||||    
T  25018154 atgcagaaggaaaagtaagtgcgggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgat 25018075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 25047334 - 25047277
Alignment:
Q  6 agatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgg 63  Q
    |||||||| ||||||||||||||||||||  ||||| || ||||||||||| ||||||    
T  25047334 agatgttggaatcatgaagtatatgaatatggatgcttatagattctccatttcttgg 25047277  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 29460484 - 29460418
Alignment:
Q  176 cagaaggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatga 242  Q
    |||||||||| ||| |||| |||| |||||| ||||||||||  | |||||||||||| ||||||||    
T  29460484 cagaaggaaagcttggtggaggtataaacaaggaaggaatcaattattacaacaacctcatcaatga 29460418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 30360262 - 30360315
Alignment:
Q  6 agatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctc 59  Q
    ||||||||  ||||||||||||||||||  ||||||||| ||||| ||||||||    
T  30360262 agatgttgggatcatgaagtatatgaatttagatgcatatagattatccatctc 30360315  T

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