View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21197_low_59 (Length: 247)

Name: NF21197_low_59
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21197_low_59
NF21197_low_59
[»] chr3 (10 HSPs)
chr3 (2-211)||(23168345-23168554)
chr3 (144-240)||(51118481-51118578)
chr3 (155-211)||(25530743-25530799)
chr3 (141-211)||(5270804-5270874)
chr3 (142-191)||(19912629-19912678)
chr3 (141-193)||(16242192-16242244)
chr3 (141-185)||(19533827-19533871)
chr3 (154-240)||(20290436-20290521)
chr3 (152-233)||(3462074-3462153)
chr3 (143-191)||(12517339-12517387)
[»] chr7 (9 HSPs)
chr7 (142-240)||(17887729-17887826)
chr7 (153-240)||(2505844-2505930)
chr7 (143-191)||(4450720-4450768)
chr7 (186-240)||(21228461-21228514)
chr7 (186-240)||(21229096-21229149)
chr7 (143-195)||(19201322-19201374)
chr7 (156-211)||(2455371-2455426)
chr7 (140-191)||(3173759-3173810)
chr7 (159-227)||(19397943-19398010)
[»] chr5 (4 HSPs)
chr5 (143-240)||(29989002-29989098)
chr5 (142-240)||(28280283-28280381)
chr5 (174-240)||(23032666-23032731)
chr5 (143-240)||(32415830-32415926)
[»] chr4 (7 HSPs)
chr4 (143-240)||(17661955-17662052)
chr4 (143-209)||(19335225-19335291)
chr4 (143-236)||(4611510-4611603)
chr4 (143-201)||(19666949-19667007)
chr4 (143-193)||(25025153-25025203)
chr4 (183-240)||(9739960-9740016)
chr4 (143-240)||(19538883-19538980)
[»] chr2 (3 HSPs)
chr2 (142-240)||(42153635-42153732)
chr2 (141-239)||(16042661-16042758)
chr2 (173-240)||(25938533-25938599)
[»] scaffold0059 (1 HSPs)
scaffold0059 (142-234)||(63947-64038)
[»] chr1 (8 HSPs)
chr1 (153-237)||(21536916-21536999)
chr1 (143-193)||(11845221-11845271)
chr1 (143-240)||(27912064-27912161)
chr1 (141-191)||(21663088-21663138)
chr1 (153-202)||(17016824-17016873)
chr1 (153-193)||(14235294-14235334)
chr1 (143-191)||(26647357-26647405)
chr1 (172-239)||(31260654-31260721)
[»] scaffold0002 (1 HSPs)
scaffold0002 (145-209)||(369252-369316)
[»] chr8 (2 HSPs)
chr8 (143-185)||(18570547-18570589)
chr8 (143-208)||(18836824-18836889)
[»] chr6 (2 HSPs)
chr6 (143-193)||(1636680-1636730)
chr6 (143-191)||(22845851-22845899)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 23168345 - 23168554
Alignment:
Q  2 tggttagtcttttgaggctcatcgcattatgtgtattgatcttatacgagagctaaccagtaaccatgacctctatatctagatgtttgggataaagaat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||    
T  23168345 tggttagtcttttgaggctcatcgcattatgtgtattgatcttatacgagagctaaccagtaatcatgacctctatatctagatgtctaggacaaagaat 23168444  T
Q  102 caattcaacaaggtcaaacacacatcaggagagtttgccattgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttt 201  Q
    ||||||||||||||||||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23168445 caattcaacaaggtcaaacacacatccaaagagttggtcattgatgacagatcatcttacgttactcttcgcatatttttcagtcatttttatttagttt 23168544  T
Q  202 tgatccaaaa 211  Q
    ||||||||||    
T  23168545 tgatccaaaa 23168554  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 51118481 - 51118578
Alignment:
Q  144 gatgacagatcatcttacgttactcttcgcatattttc-cagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    |||||||  ||||||||||||| | || |||||||||  |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  51118481 gatgacatgtcatcttacgttatttttagcatattttttcagtcatttttatttagttttgatccaaaattaaaggagttttagaacaattgcctatg 51118578  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 25530743 - 25530799
Alignment:
Q  155 atcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaa 211  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||| ||||||||    
T  25530743 atcttacgttattcttagcatatttttcagtcatttttatttagttttaatccaaaa 25530799  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 5270804 - 5270874
Alignment:
Q  141 attgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaa 211  Q
    |||||||||| | |||||||| ||| |||| | || |||| ||||||||||||||||||||| ||||||||    
T  5270804 attgatgacaaaccatcttacattattcttaggatgtttttcagtcatttttatttagttttaatccaaaa 5270874  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 19912678 - 19912629
Alignment:
Q  142 ttgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 191  Q
    |||||||||| ||||||||||||| |||| ||||||||| ||||||||||    
T  19912678 ttgatgacaggtcatcttacgttattcttagcatatttttcagtcatttt 19912629  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 16242192 - 16242244
Alignment:
Q  141 attgatgacagatcatcttacgttactcttcgcatattttccagtcattttta 193  Q
    ||||||||||| ||||||||||||| |||| ||||||||| || |||||||||    
T  16242192 attgatgacaggtcatcttacgttattcttagcatatttttcactcattttta 16242244  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 19533871 - 19533827
Alignment:
Q  141 attgatgacagatcatcttacgttactcttcgcatattttccagt 185  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||    
T  19533871 attgatgacagatcatcttacgttattcttagcatatttttcagt 19533827  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 20290436 - 20290521
Alignment:
Q  154 catcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    |||||||| ||| |||  ||||||||||||| | ||||||||||| |||||||||| | | || |||||||||| ||| ||||||||    
T  20290436 catcttacattattctaagcatattttccagccctttttatttaggtttgatccaagattgaa-gagttttagaacaactgcctatg 20290521  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 3462074 - 3462153
Alignment:
Q  152 atcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaatt 233  Q
    |||||||||||||| | || |||||||||| |||||||||||||||||||   | ||| | ||||||| |||||||||||||    
T  3462074 atcatcttacgttatttttagcatattttc-agtcatttttatttagtttaatttcaaga-taaaggaattttagagcaatt 3462153  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 12517387 - 12517339
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 191  Q
    ||||||||| ||||||||||||| |||| |||| |||| ||||||||||    
T  12517387 tgatgacaggtcatcttacgttattcttagcatctttttcagtcatttt 12517339  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 17887729 - 17887826
Alignment:
Q  142 ttgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    |||||||||| ||||| ||||||| |||| ||||||||| |||||||||||| ||||||||||||| || ||| ||||||||||||| |||||||||||    
T  17887729 ttgatgacaggtcatcctacgttattcttagcatatttttcagtcatttttagttagttttgatcc-aagatagaggagttttagagaaattgcctatg 17887826  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 2505930 - 2505844
Alignment:
Q  153 tcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||| |||||| |||||    
T  2505930 tcatcttacgttattcttagcatatttttcagtcatttttatttagtttcgatcc-aaaatagaggagttttagaacaattgtctatg 2505844  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 4450768 - 4450720
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 191  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||||||    
T  4450768 tgatgacagatcatcttacgttattcttagcatgttttccagtcatttt 4450720  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 21228514 - 21228461
Alignment:
Q  186 catttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    ||||||||||||||||||||||||   || |||||||||||||||||||||||||    
T  21228514 catttttatttagttttgatccaagt-tacaggagttttagagcaattgcctatg 21228461  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 21229149 - 21229096
Alignment:
Q  186 catttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    ||||||||||||||||||||||||   || |||||||||||||||||||||||||    
T  21229149 catttttatttagttttgatccaagt-tacaggagttttagagcaattgcctatg 21229096  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 19201322 - 19201374
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatt 195  Q
    ||||||||||||||||||||||| |||| |||| |||| |||| |||||||||    
T  19201322 tgatgacagatcatcttacgttattcttagcatgtttttcagtaatttttatt 19201374  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 2455426 - 2455371
Alignment:
Q  156 tcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaa 211  Q
    ||||||||||||||| |||| |||| ||  ||||||||||||||||| ||||||||    
T  2455426 tcttacgttactcttagcatttttttcaaacatttttatttagttttaatccaaaa 2455371  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 3173810 - 3173759
Alignment:
Q  140 cattgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 191  Q
    |||||||||||||||||||| ||||| |||| |||| |||| ||||||||||    
T  3173810 cattgatgacagatcatcttgcgttattcttagcatgtttttcagtcatttt 3173759  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 19397943 - 19398010
Alignment:
Q  159 tacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttaga 227  Q
    ||||||| | ||| || ||||| |||||||||||||||| ||||||||| ||| || ||||||||||||    
T  19397943 tacgttatttttcacaaatttttcagtcatttttatttaattttgatcc-aaattagaggagttttaga 19398010  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 29989002 - 29989098
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    |||||||||| |||||||||||| |||| ||||||||| |||| |||||||||||||||||||||  ||||| |||||||||||||| ||| ||||||    
T  29989002 tgatgacagaccatcttacgttattcttagcatatttttcagtaatttttatttagttttgatcc-gaaatagaggagttttagagctattacctatg 29989098  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 28280381 - 28280283
Alignment:
Q  142 ttgatgacagatcatcttacgttactcttcgcatattttcc-agtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    |||||||||  ||||||||||||| | || |||||||||   |||||||||||||||||||| |||| |||||| |||||| ||||| |||||| |||||    
T  28280381 ttgatgacatgtcatcttacgttatttttagcatatttttttagtcatttttatttagttttaatcc-aaaatagaggagtattagaacaattgtctatg 28280283  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 23032731 - 23032666
Alignment:
Q  174 atattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    ||||||| || ||||||||||||||||||||| | ||| || ||||||||||||||||||| |||||    
T  23032731 atatttttcaatcatttttatttagttttgat-ctaaactagaggagttttagagcaattgactatg 23032666  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 32415830 - 32415926
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    ||||||||  ||||||||| ||| |||| ||||||||| |||| ||||||||| || ||| ||||||   || |||||||||||| ||||| ||||||    
T  32415830 tgatgacatgtcatcttacattattcttagcatatttttcagtaatttttattcagcttttatccaagt-tacaggagttttagaacaatttcctatg 32415926  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 17662052 - 17661955
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcat-ttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    |||||||||||||||||| |||| |||  ||||||||| ||||||| |||||||||||||| |||| ||||||||||||| ||||| |||| |||||||    
T  17662052 tgatgacagatcatcttatgttattctaagcatatttttcagtcattttttatttagttttaatcc-aaaataaaggagtattagaacaatcgcctatg 17661955  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 19335225 - 19335291
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaa 209  Q
    ||||||||||||||||||||||| |||| |||||||||  ||||||||||| || ||||||||||||    
T  19335225 tgatgacagatcatcttacgttattcttagcatattttttagtcatttttagttcgttttgatccaa 19335291  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 4611510 - 4611603
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttattta-gttttgatccaaaaataaaggagttttagagcaattgcc 236  Q
    ||||||||| ||||||||||||| | |   |||||||| |||||||||||| ||| |||||||| |||| ||| |||||||||||| ||||||||    
T  4611510 tgatgacaggtcatcttacgttattttcaacatatttttcagtcatttttagttatgttttgat-caaacatagaggagttttagaacaattgcc 4611603  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 19666949 - 19667007
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttt 201  Q
    ||||||| ||||||||||||||| |||| ||||||||| |||||| ||||| |||||||    
T  19666949 tgatgaccgatcatcttacgttattcttagcatatttttcagtcacttttagttagttt 19667007  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 25025203 - 25025153
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcattttta 193  Q
    ||||||||| ||||||||||||| |||| |||| |||| ||||||||||||    
T  25025203 tgatgacaggtcatcttacgttattcttagcatgtttttcagtcattttta 25025153  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 9739960 - 9740016
Alignment:
Q  183 agtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    ||||||||||||||||||||||| | ||| || |||||||||||| ||||||| ||||    
T  9739960 agtcatttttatttagttttgat-ctaaattagaggagttttagaacaattgcatatg 9740016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 19538883 - 19538980
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    ||||||| ||||||||||||||| |||| | |||||||  ||||| ||||| |||||||  |  | | |||| |||||| ||||| ||||||||||||    
T  19538883 tgatgaccgatcatcttacgttattcttagtatattttttagtcacttttagttagtttaaaatcgagaatagaggagtattagaacaattgcctatg 19538980  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 42153732 - 42153635
Alignment:
Q  142 ttgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    |||||||||||||||||| ||||| | ||  |||||||| |||||||||||||||||||||| ||| ||| || | |||||||||| ||||||||||||    
T  42153732 ttgatgacagatcatcttccgttatttttaacatatttttcagtcatttttatttagttttgttcc-aaattatatgagttttagaacaattgcctatg 42153635  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 16042661 - 16042758
Alignment:
Q  141 attgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctat 239  Q
    ||||||||||   |||||||||||| ||||  ||||| || || ||||||||||||| ||||||||| |||||| || || |||||||||||| |||||    
T  16042661 attgatgacaagccatcttacgttattcttaacatatgtttcaatcatttttatttaattttgatcc-aaaatagagaagctttagagcaattacctat 16042758  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 25938599 - 25938533
Alignment:
Q  173 catattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    |||||||| ||||| ||||||||||||||| |||| |||||| |  ||| ||||||||||||||||||    
T  25938599 catatttttcagtcttttttatttagttttaatcc-aaaatagaatagtattagagcaattgcctatg 25938533  T

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Target: scaffold0059 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 63947 - 64038
Alignment:
Q  142 ttgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattg 234  Q
    ||||||| ||||||| ||||| || | || ||||||||| |||||||||||||||||||||||||| ||| || |||||||||||| ||||||    
T  63947 ttgatgagagatcattttacgctatttttagcatatttttcagtcatttttatttagttttgatcc-aaattagaggagttttagaacaattg 64038  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 21536916 - 21536999
Alignment:
Q  153 tcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaaaaataaaggagttttagagcaattgcct 237  Q
    ||||||||||||| | || ||||||||| |||||||||||| ||||||||||||| ||| || |||||||||| | |||||||||    
T  21536916 tcatcttacgttatttttagcatatttttcagtcatttttagttagttttgatcc-aaattataggagttttaaaacaattgcct 21536999  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 11845221 - 11845271
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcattttta 193  Q
    ||||||||||||||||||||||| |||| ||||||||| |||| |||||||    
T  11845221 tgatgacagatcatcttacgttattcttagcatatttttcagttattttta 11845271  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 27912161 - 27912064
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcat-ttttatttagttttgatccaaaaataaaggagttttagagcaattgcctatg 240  Q
    ||||||||  ||||||||||||| ||||  ||| |||| ||||||| |||||||||||||| |||| |||||| |||||| ||||| |||||| |||||    
T  27912161 tgatgacatgtcatcttacgttattcttaacatgtttttcagtcattttttatttagttttaatcc-aaaatagaggagtattagaacaattgtctatg 27912064  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 21663088 - 21663138
Alignment:
Q  141 attgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 191  Q
    ||||||||||| ||||||||||||| |||| |||| |||| ||||||||||    
T  21663088 attgatgacaggtcatcttacgttattcttagcatgtttttcagtcatttt 21663138  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 17016824 - 17016873
Alignment:
Q  153 tcatcttacgttactcttcgcatattttccagtcatttttatttagtttt 202  Q
    |||||| |||||| |||| ||||||||| |||| ||||||||||||||||    
T  17016824 tcatctcacgttattcttagcatatttttcagttatttttatttagtttt 17016873  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 14235294 - 14235334
Alignment:
Q  153 tcatcttacgttactcttcgcatattttccagtcattttta 193  Q
    |||||||||||||||||| |||| |||| ||||||||||||    
T  14235294 tcatcttacgttactcttagcatgtttttcagtcattttta 14235334  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 26647357 - 26647405
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 191  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||| ||||    
T  26647357 tgatgacaggtcatcttacgttattcttagcatatttttcagtcttttt 26647405  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 31260654 - 31260721
Alignment:
Q  172 gcatattttccagtcatttttatttag-ttttgatccaaaaataaaggagttttagagcaattgcctat 239  Q
    ||||||||| ||  ||||||||||||  ||||||||||| | || ||||||||||||||||||||||||    
T  31260654 gcatatttttcaaacatttttatttaaattttgatccaaga-tagaggagttttagagcaattgcctat 31260721  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 369252 - 369316
Alignment:
Q  145 atgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatccaa 209  Q
    |||||| | |||||||| ||| | || |||| |||| ||||||||||||||||||||||||||||    
T  369252 atgacataccatcttacattatttttagcatgtttttcagtcatttttatttagttttgatccaa 369316  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 18570589 - 18570547
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagt 185  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||    
T  18570589 tgatgacagatcatcttacgttattcttagcatatttttcagt 18570547  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 18836889 - 18836824
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttttatttagttttgatcca 208  Q
    ||||||||||||||||||| ||| |||| |||| |||| || ||||||| | |||||||| |||||    
T  18836889 tgatgacagatcatcttacattattcttagcatgtttttcaatcattttaagttagttttcatcca 18836824  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 1636730 - 1636680
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcattttta 193  Q
    ||||||||||||||||||||||| |||| |||| |||| |||| |||||||    
T  1636730 tgatgacagatcatcttacgttattcttagcatgtttttcagttattttta 1636680  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 22845851 - 22845899
Alignment:
Q  143 tgatgacagatcatcttacgttactcttcgcatattttccagtcatttt 191  Q
    |||||||||| ||||||||||||||||| |||| |||| |||| |||||    
T  22845851 tgatgacagaccatcttacgttactcttagcatgtttttcagttatttt 22845899  T

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