View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21197_low_6 (Length: 608)
Name: NF21197_low_6
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 39 - 587
Target Start/End: Complemental strand, 39635819 - 39635271
Alignment:
| Q |
39 |
gtattgatataacaagtaacacaatcttttgttggcccagtgggtgtgtccctttgggtttaacgaagggatgcaattttctgcttgcactaggattcaa |
138 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39635819 |
gtattgatataacaagtaacgcaatcttttgttggcccagtgggtgtgtccctttgggtttaacgaagggatgcaattttctgcttgcactaggattcaa |
39635720 |
T |
|
| Q |
139 |
atttgaaacagtgatatgaaaaggtacgagcgtctgcccacggggcaatgtttgtgtttcttgttcttaacatcgaactttagtagatagattatcctat |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39635719 |
atttgaaacagtgatatgaaaaggtacgagcgtctgcccacagggcaatgtttgtgtttcttgttcttaacatcgaactttagtagatagattatcctat |
39635620 |
T |
|
| Q |
239 |
aatttggaaaaatcaccctcgttccgatccatttaaaaattgcatatcaaatcttttcaacaaagctatatcaacaaaacaaatgatcatctacctcttg |
338 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39635619 |
attttggaaaaatcaccctcgttccgatccatttaaaaattgcatatcaaatcttttcaacaaagctatatcaacaaaacaaattatcatctacctcttg |
39635520 |
T |
|
| Q |
339 |
aataccaaggcaccacacaaattcgaagtgacaccaaccggcaaagctcctttatgtgataagtttgagcgagtcggaagtctaccaaaaattaattgcc |
438 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39635519 |
aataccaaggcaccacacaaatttgaagtgacaccaaccggctaagctcctttatgtgataagtttgagcgagtcagaagtctaccaaaaattaattgcc |
39635420 |
T |
|
| Q |
439 |
aagagaaaatttgtattttttggagagccaaactagtccaaataccccttatttatcttctagatgctgcacataaatcctacggagaacgaattttacc |
538 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| |
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| T |
39635419 |
aagagaaaatttggattttttggagagccaaactagtccaaataccccttatttatcttctagatgctgcacttaaatcctccggagaaagaattttacc |
39635320 |
T |
|
| Q |
539 |
gctcaaagtgacatgtaaagatttcaccacgaagacgctcatacgtaga |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39635319 |
gctcaaagtgacatgtaaagatttcaccacgaagacgctcatacgtaga |
39635271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 259 - 481
Target Start/End: Complemental strand, 34786776 - 34786553
Alignment:
| Q |
259 |
gttccgatccatttaaaaattgcatatcaaatcttttcaacaaagctatatcaacaaaacaaatgatcatctacctcttgaataccaaggcaccacaca- |
357 |
Q |
| |
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||||| ||||||||||||||||| || ||| || ||||||||||| ||| ||||||||| |||| || |||||||| |||| ||| |||||| |
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| T |
34786776 |
gttccaatccatttaaaaattgcgtacagaatacttccaacaaagctacatctacaaaacaagtgattctcctcctcttgattacccgagcatcacacac |
34786677 |
T |
|
| Q |
358 |
aattcgaagtgacaccaaccggcaaagctcctttatgtgataagtttgagcgagtcggaagtctaccaaaaattaattgccaagagaaaatttgtatttt |
457 |
Q |
| |
|
||| |||||| |||||||||||||| |||||| | |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||| |
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| T |
34786676 |
aatccgaagtcacaccaaccggcaacgctcctcttcaagataagtttgagcgtgtcggaagtctaccaaagattaattgccagaagaaaatttaaatttt |
34786577 |
T |
|
| Q |
458 |
ttggagagccaaactagtccaaat |
481 |
Q |
| |
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| | | ||||||||| |||||||| |
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|
| T |
34786576 |
tcgaaaagccaaactcgtccaaat |
34786553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 265 - 373
Target Start/End: Complemental strand, 4625511 - 4625402
Alignment:
| Q |
265 |
atccatttaaaaattgcatatcaaatcttttcaacaaagctatatcaacaaaacaaatgatcatctacctcttgaataccaaggcaccacaca-aattcg |
363 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||| ||||||| |||||| || || || || |||||||||||||| |||||||||||| |||| | |
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|
| T |
4625511 |
atccatttaaaaattgcatacaaaatccttccaacaaatctatatctacaaaataagtgttcctccacctcttgaatacccaggcaccacacacaatttg |
4625412 |
T |
|
| Q |
364 |
aagtgacacc |
373 |
Q |
| |
|
|||| ||||| |
|
|
| T |
4625411 |
aagtcacacc |
4625402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 35752648 - 35752684
Alignment:
| Q |
258 |
cgttccgatccatttaaaaattgcatatcaaatcttt |
294 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
35752648 |
cgttccgatccacttaaaaattgaatatcaaatcttt |
35752684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 265 - 481
Target Start/End: Original strand, 31789832 - 31790053
Alignment:
| Q |
265 |
atccatttaaaaattgcatatcaaa-tcttttcaacaaagctat---atcaacaaaacaaatgatcatctacctcttgaataccaaggcaccacaca-aa |
359 |
Q |
| |
|
|||||||||||||||||||| |||| || || ||||||||||| ||| ||||||||| ||||||| ||||||||||| | | ||||||| || |
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|
| T |
31789832 |
atccatttaaaaattgcataccaaaatcattccaacaaagctactacatctacaaaacaagtgatcattcgcctcttgaatatccgaaccccacacacaa |
31789931 |
T |
|
| Q |
360 |
ttcgaagtgacaccaaccggcaaagctcctttatgtgataagtttgagcgagtcggaagtctaccaaaaattaattgccaagagaaaatttgtatttttt |
459 |
Q |
| |
|
| |||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| | ||||| |
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|
| T |
31789932 |
tccgaagtcacaccaactggcaaagctcctcttcaagataagtttgagcgagtcggaagtctaccaaaagttaattgtcatgagaaaatttggacttttt |
31790031 |
T |
|
| Q |
460 |
ggagagccaaactagtccaaat |
481 |
Q |
| |
|
|| ||| ||||||||||||||| |
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|
| T |
31790032 |
ggggagtcaaactagtccaaat |
31790053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 371 - 463
Target Start/End: Original strand, 33823191 - 33823283
Alignment:
| Q |
371 |
accaaccggcaaagctcctttatgtgataagtttgagcgagtcggaagtctaccaaaaattaattgccaagagaaaatttgtattttttggag |
463 |
Q |
| |
|
|||||| |||||| ||||| || | ||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| | ||||||||| |
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|
| T |
33823191 |
accaactggcaaaactcctctacgagataagtttgagcgagtaggaagtctagcaataattaattgccaagagaaaatttgaactttttggag |
33823283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 247 - 343
Target Start/End: Original strand, 33823090 - 33823186
Alignment:
| Q |
247 |
aaaatcaccctcgttccgatccatttaaaaattgcatatcaaatcttttcaacaaagctatatcaacaaaacaaatgatcatctacctcttgaatac |
343 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| || |||||||| |||| ||||||||| ||||| || ||||||||||||| |
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|
| T |
33823090 |
aaaatcaccctcgttctaatccatttaaaaattgcataacaaatccttccaacaaagtagtatctacaaaacaagtgatcctccacctcttgaatac |
33823186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 380 - 489
Target Start/End: Complemental strand, 24577618 - 24577508
Alignment:
| Q |
380 |
caaagctcctttatgtgataagtttgagcgagtcggaagtctaccaaaaattaattgccaagagaaaatttgta-ttttttggagagccaaactagtcca |
478 |
Q |
| |
|
|||||||||||| | | ||||||| | |||||| ||||| |||||| |||||||| ||||||||||||||| | |||||| |||| ||||||||||| |
|
|
| T |
24577618 |
caaagctccttttcgagttaagtttcaacgagtcagaagtttaccaagaattaatttccaagagaaaatttggacttttttttggagctaaactagtcca |
24577519 |
T |
|
| Q |
479 |
aatacccctta |
489 |
Q |
| |
|
||| ||||||| |
|
|
| T |
24577518 |
aattcccctta |
24577508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 313 - 489
Target Start/End: Complemental strand, 24572318 - 24572141
Alignment:
| Q |
313 |
caaaacaaatgatcatctacctcttgaataccaaggcaccacaca-aattcgaagtgacaccaaccggcaaagctcctttatgtgataagtttgagcgag |
411 |
Q |
| |
|
|||||||| ||||| || ||||||| ||||| || |||||||| ||| | |||| ||||||||| |||||||| | || | |||||||||||| ||| |
|
|
| T |
24572318 |
caaaacaagtgatcctccacctcttaaatacatgggaaccacacacaatccaaagtcacaccaaccaacaaagctcttgtacgagataagtttgagtgag |
24572219 |
T |
|
| Q |
412 |
tcggaagtctaccaaaaattaattgccaagagaaaatttgtattttttggagagccaaactagtccaaatacccctta |
489 |
Q |
| |
|
|| |||||||||||||| | ||||||||| ||||||| | ||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
24572218 |
tcagaagtctaccaaaactgaattgccaacttaaaatttagactttttaatgaggcaaagtagtccaaattcccctta |
24572141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 7441209 - 7441159
Alignment:
| Q |
396 |
gataagtttgagcgagtcggaagtctaccaaaaattaattgccaagagaaa |
446 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| || |||||||||| |
|
|
| T |
7441209 |
gataaatttgagcgagtgggaagtctaccaaaaattacttaccaagagaaa |
7441159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 242 - 344
Target Start/End: Original strand, 33810929 - 33811031
Alignment:
| Q |
242 |
ttggaaaaatcaccctcgttccgatccatttaaaaattgcatatcaaatcttttcaacaaagctatatcaacaaaacaaatgatcatctacctcttgaat |
341 |
Q |
| |
|
|||| |||||||| |||||||| |||||||| ||||| ||||||||||| || ||| ||||||| ||| ||||||||||||||| || ||||||||||| |
|
|
| T |
33810929 |
ttggtaaaatcacactcgttccaatccatttttaaattccatatcaaatccttgcaataaagctacatctacaaaacaaatgatcctccacctcttgaat |
33811028 |
T |
|
| Q |
342 |
acc |
344 |
Q |
| |
|
||| |
|
|
| T |
33811029 |
acc |
33811031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 5831699 - 5831744
Alignment:
| Q |
402 |
tttgagcgagtcggaagtctaccaaaaattaattgccaagagaaaa |
447 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
5831699 |
tttgagcgagtcgggagtctactaaaaattatttgccaagagaaaa |
5831744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 19459410 - 19459442
Alignment:
| Q |
258 |
cgttccgatccatttaaaaattgcatatcaaat |
290 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
19459410 |
cgttccgatccatttaaaaattgaatatcaaat |
19459442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 19557088 - 19557120
Alignment:
| Q |
258 |
cgttccgatccatttaaaaattgcatatcaaat |
290 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
19557088 |
cgttccgatccatttaaaaattgaatatcaaat |
19557120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 11867235 - 11867308
Alignment:
| Q |
270 |
tttaaaaattgcatatcaaatcttttcaacaaagctatatcaac-aaaacaaatgatcatctacctcttgaata |
342 |
Q |
| |
|
|||||||||| |||| |||||| || ||||||||||| ||| || ||||||| ||||| ||||| ||||||||| |
|
|
| T |
11867235 |
tttaaaaattacataccaaatccttccaacaaagctacatctacaaaaacaagtgatcctctacatcttgaata |
11867308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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