View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_63 (Length: 240)
Name: NF21197_low_63
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 27215915 - 27215691
Alignment:
| Q |
5 |
gtatatctaacactaaaatacgtacagcggaccaaagtactactnnnnnnnttatttgagacttttccgatccatggaggcttaaatataagaattgttc |
104 |
Q |
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| T |
27215915 |
gtatatctaacactaaaatacgtacaccggaccaaagtactactaaaaaaattatttgagacttttccgatccatggaggcttaaatataagaattgttc |
27215816 |
T |
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| Q |
105 |
catataagttaccaaatactatacacattttatttttattgaccagaacaaataaatacattaattgaatgacgattcaaaccatcgatagaaatctata |
204 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27215815 |
catataagttaccaaatactatacataatttatttttattgaccagaacaaataaa-acattcgttgaatgacgattcaaaccatcgatagaaatctata |
27215717 |
T |
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| Q |
205 |
tatatgtaaagaagcagagagcaact |
230 |
Q |
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|||||||||||||||||||||||||| |
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| T |
27215716 |
tatatgtaaagaagcagagagcaact |
27215691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 27221858 - 27221639
Alignment:
| Q |
12 |
taacactaaaatacgtacagcggaccaaagtactactnnnnnnnttatttgagacttttccgatccatggaggcttaaatata-agaattgttccata-- |
108 |
Q |
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||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
27221858 |
taacactaaaatacgtacagcagaccaa-gtactact--------tatttgagacttttccgatccatggaggcttaaatatgtagaattgttccacaat |
27221768 |
T |
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| Q |
109 |
---ta-agttaccaaatac--tatacacattttatttttattgaccagaacaaataaatacattaattgaatgacgattcaaaccatcg-atagaaatct |
201 |
Q |
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| T |
27221767 |
ccatatagttaccatatacactattcatattttatttttattgaccgagtcaaattaatacattcgttgaattacgattcaacccatcggatagaaatct |
27221668 |
T |
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| Q |
202 |
atatatatgtaaagaagcagagagcaact |
230 |
Q |
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|||||||||| | |||||||||| ||||| |
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| T |
27221667 |
atatatatgtcacgaagcagagaacaact |
27221639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 27433481 - 27433422
Alignment:
| Q |
169 |
ttgaatgacgattcaaaccatcgatagaaatctatatatatgtaaagaagcagagagcaa |
228 |
Q |
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|||||| | ||||||||||||| |||| | |||||||||||| |||||||||||||||| |
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| T |
27433481 |
ttgaattaagattcaaaccatccatagtaggctatatatatgtcaagaagcagagagcaa |
27433422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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