View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21197_low_64 (Length: 240)

Name: NF21197_low_64
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21197_low_64
NF21197_low_64
[»] chr7 (2 HSPs)
chr7 (18-109)||(36133070-36133161)
chr7 (171-240)||(36134619-36134688)
[»] chr8 (1 HSPs)
chr8 (18-109)||(30813423-30813514)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 36133161 - 36133070
Alignment:
Q  18 acagctagcttcgtagccttctctttccattttaagagagataactctttaagcatgtacgcttctgcttcattcttcacatcctgtttcaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36133161 acagctagcttcgtagccttctctttccattttaagagagataactctttaagcatgtacgcttctgcttcattcttcacatcctgtttcaa 36133070  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 36134619 - 36134688
Alignment:
Q  171 ccccatctttttccatttggtgattatgctctgtgggaacaccagttgttttgcaactcaacttatcttc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36134619 ccccatctttttccatttggtgattatgctctgtgggaacaccagttgttttgcaactcaacttatcttc 36134688  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 30813514 - 30813423
Alignment:
Q  18 acagctagcttcgtagccttctctttccattttaagagagataactctttaagcatgtacgcttctgcttcattcttcacatcctgtttcaa 109  Q
    ||||||||| | ||||||||||||| |||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  30813514 acagctagcgttgtagccttctcttgccatttcaacagagataactctttgagcatgtatgcttctgcttcattcttcacatcctgtttcaa 30813423  T

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